Analysis of interatomic Contacts of Structural Units in PDB entry:
3F5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F5M entry

There are 4 chains in PDB entry 3F5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10ALA 485
B
 ARG 8GLU 483
C
 ARG 8ALA 485
D
 ARG 8GLU 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 3F5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 30Right-handed alpha
Helix 2
2
A
42 45Right-handed 310
Helix 3
3
A
94 97Right-handed 310
Helix 4
4
A
111 126Right-handed alpha
Helix 5
5
A
137 143Right-handed 310
Helix 6
6
A
145 150Right-handed 310
Helix 7
7
A
154 159Right-handed alpha
Helix 8
8
A
160 164Right-handed 310
Helix 9
9
A
177 189Right-handed alpha
Helix 10
10
A
198 215Right-handed alpha
Helix 11
11
A
240 261Right-handed alpha
Helix 12
12
A
277 288Right-handed alpha
Helix 13
13
A
301 316Right-handed alpha
Helix 14
14
A
328 332Right-handed 310
Helix 15
15
A
348 363Right-handed alpha
Helix 16
16
A
378 384Right-handed alpha
Helix 17
17
A
388 408Right-handed alpha
Helix 18
18
A
427 431Right-handed alpha
Helix 19
19
A
441 451Right-handed alpha
Helix 20
20
A
457 482Right-handed alpha
Helix 21
21
B
25 30Right-handed alpha
Helix 22
22
B
42 45Right-handed 310
Helix 23
23
B
94 97Right-handed 310
Helix 24
24
B
111 126Right-handed alpha
Helix 25
25
B
137 143Right-handed 310
Helix 26
26
B
145 150Right-handed 310
Helix 27
27
B
154 159Right-handed alpha
Helix 28
28
B
160 164Right-handed 310
Helix 29
29
B
177 189Right-handed alpha
Helix 30
30
B
198 215Right-handed alpha
Helix 31
31
B
240 261Right-handed alpha
Helix 32
32
B
277 288Right-handed alpha
Helix 33
33
B
301 316Right-handed alpha
Helix 34
34
B
328 332Right-handed 310
Helix 35
35
B
348 363Right-handed alpha
Helix 36
36
B
378 384Right-handed alpha
Helix 37
37
B
388 408Right-handed alpha
Helix 38
38
B
427 431Right-handed alpha
Helix 39
39
B
441 451Right-handed alpha
Helix 40
40
B
457 482Right-handed alpha
Helix 41
41
C
25 30Right-handed alpha
Helix 42
42
C
42 45Right-handed 310
Helix 43
43
C
94 97Right-handed 310
Helix 44
44
C
111 126Right-handed alpha
Helix 45
45
C
137 143Right-handed 310
Helix 46
46
C
145 150Right-handed 310
Helix 47
47
C
154 159Right-handed alpha
Helix 48
48
C
160 164Right-handed 310
Helix 49
49
C
177 189Right-handed alpha
Helix 50
50
C
198 215Right-handed alpha
Helix 51
51
C
240 261Right-handed alpha
Helix 52
52
C
277 288Right-handed alpha
Helix 53
53
C
301 313Right-handed alpha
Helix 54
54
C
328 332Right-handed 310
Helix 55
55
C
348 363Right-handed alpha
Helix 56
56
C
378 384Right-handed alpha
Helix 57
57
C
388 408Right-handed alpha
Helix 58
58
C
427 431Right-handed alpha
Helix 59
59
C
441 451Right-handed alpha
Helix 60
60
C
457 482Right-handed alpha
Helix 61
61
D
42 45Right-handed 310
Helix 62
62
D
94 97Right-handed 310
Helix 63
63
D
111 126Right-handed alpha
Helix 64
64
D
137 143Right-handed 310
Helix 65
65
D
145 150Right-handed 310
Helix 66
66
D
154 159Right-handed alpha
Helix 67
67
D
160 164Right-handed 310
Helix 68
68
D
177 189Right-handed alpha
Helix 69
69
D
198 215Right-handed alpha
Helix 70
70
D
240 261Right-handed alpha
Helix 71
71
D
277 288Right-handed alpha
Helix 72
72
D
301 316Right-handed alpha
Helix 73
73
D
328 332Right-handed 310
Helix 74
74
D
348 363Right-handed alpha
Helix 75
75
D
378 384Right-handed alpha
Helix 76
76
D
388 408Right-handed alpha
Helix 77
77
D
427 431Right-handed alpha
Helix 78
78
D
441 451Right-handed alpha
Helix 79
79
D
457 482Right-handed alpha
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There are 19 sheets in PDB entry 3F5M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
433 437anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
410 411anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
90 91anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
81 84anti-parallel
Strand 3
A
421 426anti-parallel
Strand 4
A
413 418anti-parallel
Strand 5
A
220 225parallel
Strand 6
A
192 197parallel
Strand 7
A
99 104parallel
Strand 8
A
131 134parallel
Strand 9
A
151 153anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
318 324parallel
Strand 3
A
265 271parallel
Strand 4
A
372 376parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
433 437anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
410 411anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
90 91anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
81 84anti-parallel
Strand 3
B
421 426anti-parallel
Strand 4
B
413 418anti-parallel
Strand 5
B
220 225parallel
Strand 6
B
192 197parallel
Strand 7
B
99 104parallel
Strand 8
B
131 134parallel
Strand 9
B
151 153anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 294first strand
Strand 2
B
318 324parallel
Strand 3
B
265 271parallel
Strand 4
B
372 376parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 15first strand
Strand 2
C
433 437anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 40first strand
Strand 2
C
90 91anti-parallel
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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
81 84anti-parallel
Strand 3
C
421 426anti-parallel
Strand 4
C
413 418anti-parallel
Strand 5
C
220 225parallel
Strand 6
C
192 197parallel
Strand 7
C
99 104parallel
Strand 8
C
131 134parallel
Strand 9
C
151 153anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
292 294first strand
Strand 2
C
318 324parallel
Strand 3
C
265 271parallel
Strand 4
C
372 376parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
433 437anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 33first strand
Strand 2
D
410 411anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 40first strand
Strand 2
D
90 91anti-parallel
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There are 9 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
81 84anti-parallel
Strand 3
D
421 426anti-parallel
Strand 4
D
413 418anti-parallel
Strand 5
D
220 225parallel
Strand 6
D
192 197parallel
Strand 7
D
99 104parallel
Strand 8
D
131 134parallel
Strand 9
D
151 153anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
292 294first strand
Strand 2
D
318 324parallel
Strand 3
D
265 271parallel
Strand 4
D
372 376parallel
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