Analysis of interatomic Contacts of Structural Units in PDB entry:
3F5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F5N entry

There are 5 chains in PDB entry 3F5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 22MET 400
B
 PRO 22PHE 407
C
 PRO 22THR 399
D
 PRO 22THR 399
E
 PRO 22THR 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 3F5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 40Right-handed alpha
Helix 2
2
A
49 64Right-handed alpha
Helix 3
3
A
65 77Right-handed alpha
Helix 4
4
A
86 97Right-handed alpha
Helix 5
5
A
123 131Right-handed alpha
Helix 6
6
A
143 158Right-handed alpha
Helix 7
7
A
168 172Right-handed 310
Helix 8
8
A
195 199Right-handed 310
Helix 9
9
A
263 271Right-handed 310
Helix 10
10
A
272 283Right-handed alpha
Helix 11
11
A
303 310Right-handed alpha
Helix 12
12
A
313 317Right-handed 310
Helix 13
13
B
22 40Right-handed alpha
Helix 14
14
B
49 64Right-handed alpha
Helix 15
15
B
65 76Right-handed alpha
Helix 16
16
B
86 97Right-handed alpha
Helix 17
17
B
121 133Right-handed alpha
Helix 18
18
B
143 158Right-handed alpha
Helix 19
19
B
168 172Right-handed 310
Helix 20
20
B
195 199Right-handed 310
Helix 21
21
B
263 268Right-handed alpha
Helix 22
22
B
269 271Right-handed 310
Helix 23
23
B
272 283Right-handed alpha
Helix 24
24
B
303 310Right-handed alpha
Helix 25
25
B
313 317Right-handed 310
Helix 26
26
C
22 40Right-handed alpha
Helix 27
27
C
49 64Right-handed alpha
Helix 28
28
C
65 77Right-handed alpha
Helix 29
29
C
86 97Right-handed alpha
Helix 30
30
C
121 131Right-handed alpha
Helix 31
31
C
143 157Right-handed alpha
Helix 32
32
C
168 172Right-handed 310
Helix 33
33
C
195 199Right-handed 310
Helix 34
34
C
266 274Right-handed alpha
Helix 35
35
C
277 283Right-handed alpha
Helix 36
36
C
303 310Right-handed alpha
Helix 37
37
C
313 317Right-handed 310
Helix 38
38
D
22 40Right-handed alpha
Helix 39
39
D
49 64Right-handed alpha
Helix 40
40
D
65 77Right-handed alpha
Helix 41
41
D
86 97Right-handed alpha
Helix 42
42
D
121 133Right-handed alpha
Helix 43
43
D
143 159Right-handed alpha
Helix 44
44
D
168 172Right-handed 310
Helix 45
45
D
195 199Right-handed 310
Helix 46
46
D
263 271Right-handed 310
Helix 47
47
D
272 283Right-handed alpha
Helix 48
48
D
303 310Right-handed alpha
Helix 49
49
E
23 40Right-handed alpha
Helix 50
50
E
49 63Right-handed alpha
Helix 51
51
E
71 77Right-handed alpha
Helix 52
52
E
86 88Right-handed 310
Helix 53
53
E
89 97Right-handed alpha
Helix 54
54
E
126 131Right-handed alpha
Helix 55
55
E
143 158Right-handed alpha
Helix 56
56
E
168 172Right-handed 310
Helix 57
57
E
247 249Right-handed 310
Helix 58
58
E
263 268Right-handed alpha
Helix 59
59
E
269 271Right-handed 310
Helix 60
60
E
272 283Right-handed alpha
Helix 61
61
E
303 310Right-handed alpha
Helix 62
62
E
313 317Right-handed 310
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There are 16 sheets in PDB entry 3F5N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
388 394anti-parallel
Strand 3
A
376 382anti-parallel
Strand 4
A
251 257anti-parallel
Strand 5
A
238 245anti-parallel
Strand 6
A
211 229anti-parallel
Strand 7
A
200 205anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
388 394anti-parallel
Strand 3
A
376 382anti-parallel
Strand 4
A
251 257anti-parallel
Strand 5
A
238 245anti-parallel
Strand 6
A
211 229anti-parallel
Strand 7
A
284 293anti-parallel
Strand 8
A
369 371parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
105 115parallel
Strand 3
A
178 187anti-parallel
Strand 4
A
335 344parallel
Strand 5
A
295 302anti-parallel
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There are 14 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
388 394anti-parallel
Strand 3
C
376 382anti-parallel
Strand 4
C
251 257anti-parallel
Strand 5
C
238 245anti-parallel
Strand 6
C
211 230anti-parallel
Strand 7
D
365 371parallel
Strand 8
D
284 293parallel
Strand 9
D
211 228anti-parallel
Strand 10
D
239 245anti-parallel
Strand 11
D
251 257anti-parallel
Strand 12
D
376 382anti-parallel
Strand 13
D
388 394anti-parallel
Strand 14
D
46 48anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
388 394anti-parallel
Strand 3
C
376 382anti-parallel
Strand 4
C
251 257anti-parallel
Strand 5
C
238 245anti-parallel
Strand 6
C
211 230anti-parallel
Strand 7
C
200 205anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
369 371first strand
Strand 2
C
284 293parallel
Strand 3
C
211 230anti-parallel
Strand 4
C
200 205anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 367first strand
Strand 2
D
365 371anti-parallel
Strand 3
D
284 293parallel
Strand 4
D
211 228anti-parallel
Strand 5
D
200 205anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
388 394anti-parallel
Strand 3
B
376 382anti-parallel
Strand 4
B
251 257anti-parallel
Strand 5
B
239 245anti-parallel
Strand 6
B
211 228anti-parallel
Strand 7
B
200 205anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
388 394anti-parallel
Strand 3
B
376 382anti-parallel
Strand 4
B
251 257anti-parallel
Strand 5
B
239 245anti-parallel
Strand 6
B
211 228anti-parallel
Strand 7
B
284 293anti-parallel
Strand 8
B
369 371parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 138first strand
Strand 2
B
104 114parallel
Strand 3
B
178 188anti-parallel
Strand 4
B
333 344parallel
Strand 5
B
295 302anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
348 349parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 139first strand
Strand 2
C
105 115parallel
Strand 3
C
178 187anti-parallel
Strand 4
C
333 344parallel
Strand 5
C
295 302anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
135 139first strand
Strand 2
D
105 115parallel
Strand 3
D
178 187anti-parallel
Strand 4
D
333 344parallel
Strand 5
D
295 302anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 48first strand
Strand 2
E
388 394anti-parallel
Strand 3
E
376 382anti-parallel
Strand 4
E
251 257anti-parallel
Strand 5
E
239 245anti-parallel
Strand 6
E
211 228anti-parallel
Strand 7
E
200 205anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 48first strand
Strand 2
E
388 394anti-parallel
Strand 3
E
376 382anti-parallel
Strand 4
E
251 257anti-parallel
Strand 5
E
239 245anti-parallel
Strand 6
E
211 228anti-parallel
Strand 7
E
284 293anti-parallel
Strand 8
E
369 371parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
135 139first strand
Strand 2
E
105 115parallel
Strand 3
E
178 187anti-parallel
Strand 4
E
333 344parallel
Strand 5
E
295 302anti-parallel
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