Analysis of interatomic Contacts of Structural Units in PDB entry:
3F5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F5Q entry

There are 2 chains in PDB entry 3F5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 6PRO 246
B
 GLN 6GLN 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 3F5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 37Right-handed alpha
Helix 2
2
A
47 63Right-handed alpha
Helix 3
3
A
77 92Right-handed alpha
Helix 4
4
A
115 127Right-handed alpha
Helix 5
5
A
127 143Right-handed alpha
Helix 6
6
A
154 158Right-handed 310
Helix 7
7
A
164 185Right-handed alpha
Helix 8
8
A
219 221Right-handed 310
Helix 9
9
A
222 231Right-handed alpha
Helix 10
10
A
232 235Right-handed 310
Helix 11
11
B
24 37Right-handed alpha
Helix 12
12
B
47 63Right-handed alpha
Helix 13
13
B
77 92Right-handed alpha
Helix 14
14
B
115 127Right-handed alpha
Helix 15
15
B
127 143Right-handed alpha
Helix 16
16
B
154 158Right-handed 310
Helix 17
17
B
164 185Right-handed alpha
Helix 18
18
B
218 221Right-handed 310
Helix 19
19
B
222 231Right-handed alpha
Helix 20
20
B
232 235Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 3F5Q. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
40 45parallel
Strand 3
A
16 19parallel
Strand 4
A
97 100parallel
Strand 5
A
148 152parallel
Strand 6
A
190 195parallel
Strand 7
A
241 243parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 70first strand
Strand 2
B
40 45parallel
Strand 3
B
16 19parallel
Strand 4
B
97 100parallel
Strand 5
B
147 152parallel
Strand 6
B
189 195parallel
Strand 7
B
241 243parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il