Analysis of interatomic Contacts of Structural Units in PDB entry:
3F5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F5V entry

There are 4 chains in PDB entry 3F5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1SER 33
A
 TRP 35LEU 222
B
 THR 1SER 33
B
 TRP 35LEU 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3F5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed alpha
Helix 2
2
A
33 52Right-handed alpha
Helix 3
3
A
58 66Right-handed alpha
Helix 4
4
A
75 87Right-handed alpha
Helix 5
5
A
91 94Right-handed 310
Helix 6
6
A
123 135Right-handed alpha
Helix 7
7
A
146 152Right-handed alpha
Helix 8
8
A
209 213Right-handed 310
Helix 9
9
B
16 20Right-handed alpha
Helix 10
10
B
33 52Right-handed alpha
Helix 11
11
B
58 66Right-handed alpha
Helix 12
12
B
75 87Right-handed alpha
Helix 13
13
B
91 94Right-handed 310
Helix 14
14
B
123 135Right-handed alpha
Helix 15
15
B
146 152Right-handed alpha
Helix 16
16
B
209 213Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 3F5V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
168 180anti-parallel
Strand 3
A
138 144anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
168 180anti-parallel
Strand 3
A
183 189anti-parallel
Strand 4
A
201 205anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
218 221anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
168 180anti-parallel
Strand 3
B
138 144anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
168 180anti-parallel
Strand 3
B
183 189anti-parallel
Strand 4
B
201 205anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
218 221anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il