Analysis of interatomic Contacts of Structural Units in PDB entry:
3F65

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3F65 entry

There are 8 chains in PDB entry 3F65 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LYS 206
B	SER 1	LYS 205
C	SER 1	LYS 206
D	SER 1	LYS 205
E	SER 1	LYS 204
F	SER 1	ASN 203
G	SER 1	LYS 204
H	SER 1	ASP 5

There are 16 helices in PDB entry 3F65. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	113	117	Right-handed 310
Helix 2	2	A	122	127	Right-handed 310
Helix 3	3	A	163	172	Right-handed alpha
Helix 4	4	B	113	117	Right-handed 310
Helix 5	5	B	122	127	Right-handed 310
Helix 6	6	B	163	171	Right-handed alpha
Helix 7	7	C	113	117	Right-handed 310
Helix 8	8	C	122	127	Right-handed 310
Helix 9	9	C	163	172	Right-handed alpha
Helix 10	10	D	113	121	Right-handed 310
Helix 11	11	E	113	117	Right-handed 310
Helix 12	12	E	163	172	Right-handed alpha
Helix 13	13	F	113	121	Right-handed 310
Helix 14	14	F	122	126	Right-handed 310
Helix 15	15	G	113	117	Right-handed 310
Helix 16	16	H	113	121	Right-handed 310

There are 25 sheets in PDB entry 3F65. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	63	70	anti-parallel
Strand 4	A	49	52	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	A	98	112	parallel
Strand 3	B	98	112	anti-parallel
Strand 4	B	8	12	parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	58	first strand
Strand 2	A	31	38	anti-parallel
Strand 3	A	81	90	anti-parallel
Strand 4	A	98	112	anti-parallel
Strand 5	B	98	112	anti-parallel
Strand 6	B	81	90	anti-parallel
Strand 7	B	31	39	anti-parallel
Strand 8	B	55	58	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	137	140	anti-parallel
Strand 3	A	178	181	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	149	153	anti-parallel
Strand 3	A	187	191	anti-parallel
Strand 4	A	197	201	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	63	70	anti-parallel
Strand 4	B	49	52	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	137	140	anti-parallel
Strand 3	B	178	181	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	187	191	anti-parallel
Strand 3	B	197	201	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	63	70	anti-parallel
Strand 4	C	49	52	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	C	98	112	parallel
Strand 3	D	98	112	anti-parallel
Strand 4	D	8	12	parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	58	first strand
Strand 2	C	31	39	anti-parallel
Strand 3	C	81	90	anti-parallel
Strand 4	C	98	112	anti-parallel
Strand 5	D	98	112	anti-parallel
Strand 6	D	81	90	anti-parallel
Strand 7	D	31	39	anti-parallel
Strand 8	D	55	58	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	137	140	anti-parallel
Strand 3	C	178	181	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	160	first strand
Strand 2	C	149	153	anti-parallel
Strand 3	C	187	191	anti-parallel
Strand 4	C	197	201	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	63	70	anti-parallel
Strand 4	D	49	52	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	4	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	63	70	anti-parallel
Strand 4	E	49	52	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	12	first strand
Strand 2	E	98	112	parallel
Strand 3	F	98	112	anti-parallel
Strand 4	F	8	12	parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	58	first strand
Strand 2	E	31	39	anti-parallel
Strand 3	E	81	90	anti-parallel
Strand 4	E	98	112	anti-parallel
Strand 5	F	98	112	anti-parallel
Strand 6	F	81	90	anti-parallel
Strand 7	F	31	38	anti-parallel
Strand 8	F	55	58	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	131	first strand
Strand 2	E	137	140	anti-parallel
Strand 3	E	178	181	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	4	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	63	70	anti-parallel
Strand 4	F	49	52	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	4	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	63	69	anti-parallel
Strand 4	G	50	51	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	12	first strand
Strand 2	G	98	112	parallel
Strand 3	H	98	112	anti-parallel
Strand 4	H	8	12	parallel

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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	58	first strand
Strand 2	G	31	38	anti-parallel
Strand 3	G	84	90	anti-parallel
Strand 4	G	98	112	anti-parallel
Strand 5	H	98	112	anti-parallel
Strand 6	H	81	90	anti-parallel
Strand 7	H	31	38	anti-parallel
Strand 8	H	55	58	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	131	first strand
Strand 2	G	137	140	anti-parallel
Strand 3	G	178	181	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	159	first strand
Strand 2	G	149	153	anti-parallel
Strand 3	G	188	191	anti-parallel
Strand 4	G	197	200	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	4	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	63	70	anti-parallel
Strand 4	H	49	52	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3F65

Analysis of interatomic Contacts of Structural Units in PDB entry:
3F65