Analysis of interatomic Contacts of Structural Units in PDB entry:
3F69


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F69 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 3F69 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3VAL 287
B
 THR 2VAL 170
B
 GLN 172VAL 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3F69. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 47Right-handed 310
Helix 2
2
A
49 62Right-handed alpha
Helix 3
3
A
100 108Right-handed alpha
Helix 4
4
A
111 131Right-handed alpha
Helix 5
5
A
140 142Right-handed 310
Helix 6
6
A
184 190Right-handed alpha
Helix 7
7
A
194 212Right-handed alpha
Helix 8
8
A
220 231Right-handed alpha
Helix 9
9
A
235 239Right-handed 310
Helix 10
10
A
244 255Right-handed alpha
Helix 11
11
A
258 262Right-handed 310
Helix 12
12
A
265 279Right-handed alpha
Helix 13
13
B
44 47Right-handed 310
Helix 14
14
B
49 62Right-handed alpha
Helix 15
15
B
100 108Right-handed alpha
Helix 16
16
B
111 132Right-handed alpha
Helix 17
17
B
140 142Right-handed 310
Helix 18
18
B
184 190Right-handed alpha
Helix 19
19
B
194 212Right-handed alpha
Helix 20
20
B
220 231Right-handed alpha
Helix 21
21
B
235 239Right-handed 310
Helix 22
22
B
244 255Right-handed alpha
Helix 23
23
B
258 262Right-handed 310
Helix 24
24
B
265 279Right-handed alpha
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There are 4 sheets in PDB entry 3F69. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
11 19anti-parallel
Strand 3
A
23 30anti-parallel
Strand 4
A
35 42anti-parallel
Strand 5
A
85 92anti-parallel
Strand 6
A
74 82anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
144 147anti-parallel
Strand 3
A
152 154anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
11 19anti-parallel
Strand 3
B
23 30anti-parallel
Strand 4
B
35 42anti-parallel
Strand 5
B
87 93anti-parallel
Strand 6
B
74 80anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
144 147anti-parallel
Strand 3
B
152 154anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il