Analysis of interatomic Contacts of Structural Units in PDB entry:
3F6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F6D entry

There are 2 chains in PDB entry 3F6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 218
B
 MET 1GLY 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3F6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 23Right-handed alpha
Helix 2
2
A
36 39Right-handed 310
Helix 3
3
A
40 47Right-handed alpha
Helix 4
4
A
65 78Right-handed alpha
Helix 5
5
A
81 89Right-handed alpha
Helix 6
6
A
92 109Right-handed alpha
Helix 7
7
A
109 123Right-handed alpha
Helix 8
8
A
131 149Right-handed alpha
Helix 9
9
A
162 178Right-handed alpha
Helix 10
10
A
181 184Right-handed 310
Helix 11
11
A
185 199Right-handed alpha
Helix 12
12
A
201 213Right-handed alpha
Helix 13
13
A
214 217Right-handed 310
Helix 14
14
B
9 23Right-handed alpha
Helix 15
15
B
36 39Right-handed 310
Helix 16
16
B
40 47Right-handed alpha
Helix 17
17
B
65 77Right-handed alpha
Helix 18
18
B
78 80Right-handed 310
Helix 19
19
B
81 89Right-handed alpha
Helix 20
20
B
92 109Right-handed alpha
Helix 21
21
B
109 119Right-handed alpha
Helix 22
22
B
131 149Right-handed alpha
Helix 23
23
B
162 179Right-handed alpha
Helix 24
24
B
181 184Right-handed 310
Helix 25
25
B
185 199Right-handed alpha
Helix 26
26
B
201 213Right-handed alpha
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There are 2 sheets in PDB entry 3F6D. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
2 5parallel
Strand 3
A
54 56anti-parallel
Strand 4
A
62 64anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
2 5parallel
Strand 3
B
54 56anti-parallel
Strand 4
B
62 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il