Analysis of interatomic Contacts of Structural Units in PDB entry:
3F70

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3F70 entry

There are 2 chains in PDB entry 3F70 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 172	PRO 609
B	GLN 172	PRO 609

There are 25 helices in PDB entry 3F70. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	180	189	Right-handed alpha
Helix 2	2	A	194	198	Right-handed 310
Helix 3	3	A	203	210	Right-handed 310
Helix 4	4	A	271	276	Right-handed alpha
Helix 5	5	A	286	290	Right-handed 310
Helix 6	6	A	292	302	Right-handed alpha
Helix 7	7	A	310	319	Right-handed alpha
Helix 8	8	A	379	385	Right-handed alpha
Helix 9	9	A	488	493	Right-handed alpha
Helix 10	10	A	509	518	Right-handed alpha
Helix 11	11	A	523	527	Right-handed 310
Helix 12	12	A	574	578	Right-handed 310
Helix 13	13	A	592	598	Right-handed alpha
Helix 14	14	B	180	188	Right-handed alpha
Helix 15	15	B	194	198	Right-handed 310
Helix 16	16	B	271	276	Right-handed alpha
Helix 17	17	B	292	302	Right-handed alpha
Helix 18	18	B	310	318	Right-handed alpha
Helix 19	19	B	379	385	Right-handed alpha
Helix 20	20	B	411	415	Right-handed 310
Helix 21	21	B	488	493	Right-handed alpha
Helix 22	22	B	509	517	Right-handed alpha
Helix 23	23	B	523	527	Right-handed 310
Helix 24	24	B	574	578	Right-handed 310
Helix 25	25	B	592	598	Right-handed alpha

There are 14 sheets in PDB entry 3F70. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	230	239	anti-parallel
Strand 4	A	215	219	anti-parallel
Strand 5	A	267	268	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	369	first strand
Strand 2	A	352	357	anti-parallel
Strand 3	A	340	349	anti-parallel
Strand 4	A	328	332	anti-parallel
Strand 5	A	375	377	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	422	first strand
Strand 2	B	421	423	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	458	463	anti-parallel
Strand 3	A	441	453	anti-parallel
Strand 4	A	433	438	anti-parallel
Strand 5	A	484	485	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	458	463	anti-parallel
Strand 3	A	441	453	anti-parallel
Strand 4	A	497	498	parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	582	first strand
Strand 2	A	565	570	anti-parallel
Strand 3	A	553	562	anti-parallel
Strand 4	A	541	545	anti-parallel
Strand 5	A	588	589	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	582	first strand
Strand 2	A	565	570	anti-parallel
Strand 3	A	553	562	anti-parallel
Strand 4	A	601	602	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	261	first strand
Strand 2	B	242	247	anti-parallel
Strand 3	B	230	239	anti-parallel
Strand 4	B	215	219	anti-parallel
Strand 5	B	267	268	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	369	first strand
Strand 2	B	352	357	anti-parallel
Strand 3	B	339	349	anti-parallel
Strand 4	B	328	332	anti-parallel
Strand 5	B	375	376	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	369	first strand
Strand 2	B	352	357	anti-parallel
Strand 3	B	339	349	anti-parallel
Strand 4	B	387	388	parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	478	first strand
Strand 2	B	458	463	anti-parallel
Strand 3	B	441	453	anti-parallel
Strand 4	B	433	438	anti-parallel
Strand 5	B	484	485	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	478	first strand
Strand 2	B	458	463	anti-parallel
Strand 3	B	441	453	anti-parallel
Strand 4	B	497	498	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	582	first strand
Strand 2	B	565	570	anti-parallel
Strand 3	B	553	562	anti-parallel
Strand 4	B	541	545	anti-parallel
Strand 5	B	588	589	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	582	first strand
Strand 2	B	565	570	anti-parallel
Strand 3	B	553	562	anti-parallel
Strand 4	B	601	602	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3F70

Analysis of interatomic Contacts of Structural Units in PDB entry:
3F70