Analysis of interatomic Contacts of Structural Units in PDB entry:
3F73


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F73 entry

There are 6 chains in PDB entry 3F73 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5VAL 685
B
 LEU 4VAL 685
C
 T 1 T 21
H
 C 8 G 19
X
 T 1 T 21
Y
 U 9 G 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 3F73. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 25Right-handed alpha
Helix 2
2
A
42 54Right-handed alpha
Helix 3
3
A
102 123Right-handed alpha
Helix 4
4
A
178 184Right-handed alpha
Helix 5
5
A
222 230Right-handed alpha
Helix 6
6
A
282 302Right-handed alpha
Helix 7
7
A
329 331Right-handed 310
Helix 8
8
A
332 337Right-handed alpha
Helix 9
9
A
358 372Right-handed alpha
Helix 10
10
A
384 387Right-handed 310
Helix 11
11
A
388 399Right-handed alpha
Helix 12
12
A
414 428Right-handed alpha
Helix 13
13
A
443 459Right-handed alpha
Helix 14
14
A
514 535Right-handed alpha
Helix 15
15
A
550 553Right-handed 310
Helix 16
16
A
554 561Right-handed alpha
Helix 17
17
A
562 564Right-handed 310
Helix 18
18
A
627 639Right-handed alpha
Helix 19
19
A
653 670Right-handed alpha
Helix 20
20
A
671 674Right-handed 310
Helix 21
21
B
41 54Right-handed alpha
Helix 22
22
B
102 123Right-handed alpha
Helix 23
23
B
178 185Right-handed alpha
Helix 24
24
B
222 230Right-handed alpha
Helix 25
25
B
257 259Right-handed 310
Helix 26
26
B
282 300Right-handed alpha
Helix 27
27
B
329 331Right-handed 310
Helix 28
28
B
332 337Right-handed alpha
Helix 29
29
B
358 371Right-handed alpha
Helix 30
30
B
388 400Right-handed alpha
Helix 31
31
B
414 428Right-handed alpha
Helix 32
32
B
443 458Right-handed alpha
Helix 33
33
B
514 532Right-handed alpha
Helix 34
34
B
550 553Right-handed 310
Helix 35
35
B
554 565Right-handed alpha
Helix 36
36
B
627 638Right-handed alpha
Helix 37
37
B
653 669Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3F73. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
133 138anti-parallel
Strand 3
A
145 157anti-parallel
Strand 4
A
162 175anti-parallel
Strand 5
A
6 18anti-parallel
Strand 6
A
307 315anti-parallel
Strand 7
A
592 595anti-parallel
Strand 8
A
600 604anti-parallel
Strand 9
A
617 623anti-parallel
Strand 10
A
567 574anti-parallel
Strand 11
A
540 545parallel
Strand 12
A
473 479parallel
Strand 13
A
489 494anti-parallel
Strand 14
A
502 505anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
133 138anti-parallel
Strand 3
A
145 157anti-parallel
Strand 4
A
162 175anti-parallel
Strand 5
A
6 18anti-parallel
Strand 6
A
581 583anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
87 95anti-parallel
Strand 5
A
76 78anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 257first strand
Strand 2
A
241 245anti-parallel
Strand 3
A
201 207anti-parallel
Strand 4
A
192 195anti-parallel
Strand 5
A
261 263anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
321 322anti-parallel
Strand 3
A
464 465anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
345 350parallel
Strand 3
A
405 410parallel
Strand 4
A
432 436parallel
Back to list of sheets
Back to top of page

There are 14 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
133 142anti-parallel
Strand 3
B
145 157anti-parallel
Strand 4
B
162 175anti-parallel
Strand 5
B
7 18anti-parallel
Strand 6
B
307 315anti-parallel
Strand 7
B
592 595anti-parallel
Strand 8
B
600 604anti-parallel
Strand 9
B
617 623anti-parallel
Strand 10
B
567 574anti-parallel
Strand 11
B
540 545parallel
Strand 12
B
473 479parallel
Strand 13
B
489 494anti-parallel
Strand 14
B
502 505anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
133 142anti-parallel
Strand 3
B
145 157anti-parallel
Strand 4
B
162 175anti-parallel
Strand 5
B
7 18anti-parallel
Strand 6
B
581 583anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 60first strand
Strand 2
B
63 66anti-parallel
Strand 3
B
27 34anti-parallel
Strand 4
B
84 92anti-parallel
Strand 5
B
76 81anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 245first strand
Strand 2
B
201 207anti-parallel
Strand 3
B
192 195anti-parallel
Strand 4
B
261 263anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 327first strand
Strand 2
B
321 322anti-parallel
Strand 3
B
464 465anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 380first strand
Strand 2
B
345 350parallel
Strand 3
B
405 410parallel
Strand 4
B
432 436parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il