Analysis of interatomic Contacts of Structural Units in PDB entry:
3F79

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3F79 entry

There are 6 chains in PDB entry 3F79 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 148	ASN 392
B	ALA 147	ASN 392
C	ALA 147	ASN 392
D	LEU 149	LEU 393
E	ALA 147	ASN 392
F	ALA 147	SER 330

There are 31 helices in PDB entry 3F79. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	148	167	Right-handed alpha
Helix 2	2	A	215	237	Right-handed alpha
Helix 3	3	A	246	259	Right-handed alpha
Helix 4	4	A	354	362	Right-handed alpha
Helix 5	5	A	365	372	Right-handed alpha
Helix 6	6	B	147	167	Right-handed alpha
Helix 7	7	B	215	236	Right-handed alpha
Helix 8	8	B	247	260	Right-handed alpha
Helix 9	9	B	352	362	Right-handed alpha
Helix 10	10	B	365	371	Right-handed alpha
Helix 11	11	C	147	167	Right-handed alpha
Helix 12	12	C	215	235	Right-handed alpha
Helix 13	13	C	246	260	Right-handed alpha
Helix 14	14	C	353	362	Right-handed alpha
Helix 15	15	C	366	373	Right-handed alpha
Helix 16	16	D	149	165	Right-handed alpha
Helix 17	17	D	215	237	Right-handed alpha
Helix 18	18	D	248	259	Right-handed alpha
Helix 19	19	D	349	354	Right-handed alpha
Helix 20	20	D	354	362	Right-handed alpha
Helix 21	21	D	365	373	Right-handed alpha
Helix 22	22	E	147	167	Right-handed alpha
Helix 23	23	E	215	236	Right-handed alpha
Helix 24	24	E	246	260	Right-handed alpha
Helix 25	25	E	353	362	Right-handed alpha
Helix 26	26	E	365	372	Right-handed alpha
Helix 27	27	F	148	165	Right-handed alpha
Helix 28	28	F	215	235	Right-handed alpha
Helix 29	29	F	246	260	Right-handed alpha
Helix 30	30	F	354	362	Right-handed alpha
Helix 31	31	F	365	372	Right-handed alpha

There are 15 sheets in PDB entry 3F79. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	177	184	anti-parallel
Strand 3	A	384	391	anti-parallel
Strand 4	A	329	334	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	199	first strand
Strand 2	A	203	211	anti-parallel
Strand 3	A	267	275	anti-parallel
Strand 4	A	280	285	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	301	302	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	384	391	anti-parallel
Strand 4	B	329	333	anti-parallel
Strand 5	B	293	296	anti-parallel
Strand 6	B	299	302	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	199	first strand
Strand 2	B	203	211	anti-parallel
Strand 3	B	267	275	anti-parallel
Strand 4	B	280	285	anti-parallel
Strand 5	B	321	324	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	177	184	anti-parallel
Strand 3	C	384	391	anti-parallel
Strand 4	C	329	333	anti-parallel
Strand 5	C	293	296	anti-parallel
Strand 6	C	299	302	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	198	first strand
Strand 2	C	203	211	anti-parallel
Strand 3	C	267	275	anti-parallel
Strand 4	C	280	285	anti-parallel
Strand 5	C	321	324	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	174	first strand
Strand 2	D	177	184	anti-parallel
Strand 3	D	384	391	anti-parallel
Strand 4	D	329	333	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	198	first strand
Strand 2	D	203	211	anti-parallel
Strand 3	D	267	275	anti-parallel
Strand 4	D	280	285	anti-parallel
Strand 5	D	320	324	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	296	first strand
Strand 2	D	299	302	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	174	first strand
Strand 2	E	177	184	anti-parallel
Strand 3	E	384	391	anti-parallel
Strand 4	E	329	334	anti-parallel
Strand 5	E	293	296	anti-parallel
Strand 6	E	299	302	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	199	first strand
Strand 2	E	203	211	anti-parallel
Strand 3	E	267	268	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	199	first strand
Strand 2	E	203	211	anti-parallel
Strand 3	E	270	275	anti-parallel
Strand 4	E	280	285	anti-parallel
Strand 5	E	321	324	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	172	174	first strand
Strand 2	F	177	184	anti-parallel
Strand 3	F	384	391	anti-parallel
Strand 4	F	329	334	anti-parallel
Strand 5	F	293	295	anti-parallel
Strand 6	F	300	302	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	192	199	first strand
Strand 2	F	203	211	anti-parallel
Strand 3	F	267	275	anti-parallel
Strand 4	F	280	285	anti-parallel
Strand 5	F	320	324	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3F79

Analysis of interatomic Contacts of Structural Units in PDB entry:
3F79