Analysis of interatomic Contacts of Structural Units in PDB entry:
3F7F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3F7F entry

There are 4 chains in PDB entry 3F7F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 729
B	MET 1	ILE 729
C	MET 1	ILE 729
D	MET 1	ILE 729

There are 76 helices in PDB entry 3F7F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	85	87	Right-handed 310
Helix 2	2	A	103	106	Right-handed 310
Helix 3	3	A	135	140	Right-handed alpha
Helix 4	4	A	202	209	Right-handed 310
Helix 5	5	A	385	393	Right-handed alpha
Helix 6	6	A	405	416	Right-handed alpha
Helix 7	7	A	416	429	Right-handed alpha
Helix 8	8	A	439	458	Right-handed alpha
Helix 9	9	A	488	495	Right-handed alpha
Helix 10	10	A	504	518	Right-handed alpha
Helix 11	11	A	521	538	Right-handed alpha
Helix 12	12	A	545	558	Right-handed alpha
Helix 13	13	A	563	575	Right-handed alpha
Helix 14	14	A	578	589	Right-handed alpha
Helix 15	15	A	608	640	Right-handed alpha
Helix 16	16	A	647	671	Right-handed alpha
Helix 17	17	A	671	681	Right-handed alpha
Helix 18	18	A	694	712	Right-handed alpha
Helix 19	19	A	718	729	Right-handed alpha
Helix 20	20	B	85	87	Right-handed 310
Helix 21	21	B	103	106	Right-handed 310
Helix 22	22	B	135	140	Right-handed alpha
Helix 23	23	B	202	209	Right-handed 310
Helix 24	24	B	385	393	Right-handed alpha
Helix 25	25	B	405	416	Right-handed alpha
Helix 26	26	B	416	429	Right-handed alpha
Helix 27	27	B	439	458	Right-handed alpha
Helix 28	28	B	488	495	Right-handed alpha
Helix 29	29	B	504	518	Right-handed alpha
Helix 30	30	B	521	538	Right-handed alpha
Helix 31	31	B	545	558	Right-handed alpha
Helix 32	32	B	563	575	Right-handed alpha
Helix 33	33	B	578	589	Right-handed alpha
Helix 34	34	B	608	640	Right-handed alpha
Helix 35	35	B	647	671	Right-handed alpha
Helix 36	36	B	671	681	Right-handed alpha
Helix 37	37	B	694	712	Right-handed alpha
Helix 38	38	B	718	729	Right-handed alpha
Helix 39	39	C	85	87	Right-handed 310
Helix 40	40	C	103	106	Right-handed 310
Helix 41	41	C	135	140	Right-handed alpha
Helix 42	42	C	202	209	Right-handed 310
Helix 43	43	C	385	393	Right-handed alpha
Helix 44	44	C	405	416	Right-handed alpha
Helix 45	45	C	416	429	Right-handed alpha
Helix 46	46	C	439	458	Right-handed alpha
Helix 47	47	C	488	495	Right-handed alpha
Helix 48	48	C	504	518	Right-handed alpha
Helix 49	49	C	521	538	Right-handed alpha
Helix 50	50	C	545	558	Right-handed alpha
Helix 51	51	C	563	575	Right-handed alpha
Helix 52	52	C	578	589	Right-handed alpha
Helix 53	53	C	608	640	Right-handed alpha
Helix 54	54	C	647	671	Right-handed alpha
Helix 55	55	C	671	681	Right-handed alpha
Helix 56	56	C	694	712	Right-handed alpha
Helix 57	57	C	718	729	Right-handed alpha
Helix 58	58	D	85	87	Right-handed 310
Helix 59	59	D	103	106	Right-handed 310
Helix 60	60	D	135	140	Right-handed alpha
Helix 61	61	D	202	209	Right-handed 310
Helix 62	62	D	385	393	Right-handed alpha
Helix 63	63	D	405	416	Right-handed alpha
Helix 64	64	D	416	430	Right-handed alpha
Helix 65	65	D	439	458	Right-handed alpha
Helix 66	66	D	488	495	Right-handed alpha
Helix 67	67	D	504	518	Right-handed alpha
Helix 68	68	D	521	538	Right-handed alpha
Helix 69	69	D	545	558	Right-handed alpha
Helix 70	70	D	563	575	Right-handed alpha
Helix 71	71	D	578	589	Right-handed alpha
Helix 72	72	D	608	640	Right-handed alpha
Helix 73	73	D	647	671	Right-handed alpha
Helix 74	74	D	671	681	Right-handed alpha
Helix 75	75	D	694	712	Right-handed alpha
Helix 76	76	D	718	729	Right-handed alpha

There are 32 sheets in PDB entry 3F7F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	337	first strand
Strand 2	A	349	357	anti-parallel
Strand 3	A	360	368	anti-parallel
Strand 4	A	376	381	anti-parallel
Strand 5	A	2	10	parallel
Strand 6	A	480	486	anti-parallel
Strand 7	A	470	475	anti-parallel
Strand 8	A	460	466	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	92	96	parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	67	72	anti-parallel
Strand 5	A	56	61	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	112	first strand
Strand 2	A	116	122	anti-parallel
Strand 3	A	128	134	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	168	first strand
Strand 2	A	174	178	anti-parallel
Strand 3	A	183	184	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	194	195	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	229	first strand
Strand 2	A	233	238	anti-parallel
Strand 3	A	242	247	anti-parallel
Strand 4	A	252	258	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	282	first strand
Strand 2	A	286	291	anti-parallel
Strand 3	A	297	304	anti-parallel
Strand 4	A	312	314	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	282	first strand
Strand 2	A	286	291	anti-parallel
Strand 3	A	297	304	anti-parallel
Strand 4	A	318	320	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	337	first strand
Strand 2	B	349	357	anti-parallel
Strand 3	B	360	368	anti-parallel
Strand 4	B	376	381	anti-parallel
Strand 5	B	2	10	parallel
Strand 6	B	480	486	anti-parallel
Strand 7	B	470	475	anti-parallel
Strand 8	B	460	466	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	92	96	parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	67	72	anti-parallel
Strand 5	B	56	61	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	112	first strand
Strand 2	B	116	122	anti-parallel
Strand 3	B	128	134	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	168	first strand
Strand 2	B	174	178	anti-parallel
Strand 3	B	183	184	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	194	195	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	229	first strand
Strand 2	B	233	238	anti-parallel
Strand 3	B	242	247	anti-parallel
Strand 4	B	252	258	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	282	first strand
Strand 2	B	286	291	anti-parallel
Strand 3	B	297	304	anti-parallel
Strand 4	B	312	314	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	282	first strand
Strand 2	B	286	291	anti-parallel
Strand 3	B	297	304	anti-parallel
Strand 4	B	318	320	anti-parallel

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There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	337	first strand
Strand 2	C	349	357	anti-parallel
Strand 3	C	360	368	anti-parallel
Strand 4	C	376	381	anti-parallel
Strand 5	C	2	10	parallel
Strand 6	C	480	486	anti-parallel
Strand 7	C	470	475	anti-parallel
Strand 8	C	460	466	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	92	96	parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	67	72	anti-parallel
Strand 5	C	56	61	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	112	first strand
Strand 2	C	116	122	anti-parallel
Strand 3	C	128	134	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	168	first strand
Strand 2	C	174	178	anti-parallel
Strand 3	C	183	184	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	194	195	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	229	first strand
Strand 2	C	233	238	anti-parallel
Strand 3	C	242	247	anti-parallel
Strand 4	C	252	258	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	282	first strand
Strand 2	C	286	291	anti-parallel
Strand 3	C	297	304	anti-parallel
Strand 4	C	312	314	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	282	first strand
Strand 2	C	286	291	anti-parallel
Strand 3	C	297	304	anti-parallel
Strand 4	C	318	320	anti-parallel

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There are 8 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	337	first strand
Strand 2	D	349	357	anti-parallel
Strand 3	D	360	368	anti-parallel
Strand 4	D	376	381	anti-parallel
Strand 5	D	2	10	parallel
Strand 6	D	480	486	anti-parallel
Strand 7	D	470	475	anti-parallel
Strand 8	D	460	466	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	26	first strand
Strand 2	D	92	96	parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	67	72	anti-parallel
Strand 5	D	56	61	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	112	first strand
Strand 2	D	116	122	anti-parallel
Strand 3	D	128	134	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	168	first strand
Strand 2	D	174	178	anti-parallel
Strand 3	D	183	184	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	188	first strand
Strand 2	D	194	195	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	229	first strand
Strand 2	D	233	238	anti-parallel
Strand 3	D	242	247	anti-parallel
Strand 4	D	252	258	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	282	first strand
Strand 2	D	286	291	anti-parallel
Strand 3	D	297	304	anti-parallel
Strand 4	D	312	314	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	282	first strand
Strand 2	D	286	291	anti-parallel
Strand 3	D	297	304	anti-parallel
Strand 4	D	318	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3F7F

Analysis of interatomic Contacts of Structural Units in PDB entry:
3F7F