Analysis of interatomic Contacts of Structural Units in PDB entry:
3F7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F7P entry

There are 5 chains in PDB entry 3F7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 60PRO 290
B
 VAL 60PRO 290
C
 LEU 1127PRO 1330
D
 ASP 1126PRO 1330
E
 ASP 1126MET 1348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3F7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 84Right-handed alpha
Helix 2
2
A
85 87Right-handed 310
Helix 3
3
A
100 112Right-handed alpha
Helix 4
4
A
122 140Right-handed alpha
Helix 5
5
A
148 154Right-handed alpha
Helix 6
6
A
156 172Right-handed alpha
Helix 7
7
A
186 199Right-handed alpha
Helix 8
8
A
211 215Right-handed 310
Helix 9
9
A
217 228Right-handed alpha
Helix 10
10
A
229 232Right-handed 310
Helix 11
11
A
233 238Right-handed alpha
Helix 12
12
A
241 258Right-handed alpha
Helix 13
13
A
264 269Right-handed alpha
Helix 14
14
A
274 288Right-handed alpha
Helix 15
15
B
65 84Right-handed alpha
Helix 16
16
B
85 87Right-handed 310
Helix 17
17
B
100 112Right-handed alpha
Helix 18
18
B
122 140Right-handed alpha
Helix 19
19
B
148 154Right-handed alpha
Helix 20
20
B
156 172Right-handed alpha
Helix 21
21
B
186 199Right-handed alpha
Helix 22
22
B
211 215Right-handed 310
Helix 23
23
B
217 228Right-handed alpha
Helix 24
24
B
229 232Right-handed 310
Helix 25
25
B
233 238Right-handed alpha
Helix 26
26
B
241 258Right-handed alpha
Helix 27
27
B
264 269Right-handed alpha
Helix 28
28
B
274 288Right-handed alpha
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There are 16 sheets in PDB entry 3F7P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
C
1282 1285anti-parallel
Strand 3
C
1236 1239anti-parallel
Strand 4
C
1227 1230anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
D
1282 1285anti-parallel
Strand 3
D
1236 1239anti-parallel
Strand 4
D
1227 1230anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1131 1137first strand
Strand 2
C
1143 1148anti-parallel
Strand 3
C
1180 1183anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1172 1176first strand
Strand 2
C
1156 1163anti-parallel
Strand 3
C
1191 1200anti-parallel
Strand 4
C
1203 1207anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1172 1176first strand
Strand 2
C
1156 1163anti-parallel
Strand 3
C
1191 1200anti-parallel
Strand 4
C
1211 1214anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1305 1306first strand
Strand 2
C
1293 1302anti-parallel
Strand 3
C
1252 1259anti-parallel
Strand 4
C
1271 1275anti-parallel
Strand 5
E
1345 1348parallel
Strand 6
E
1271 1275parallel
Strand 7
E
1252 1259anti-parallel
Strand 8
E
1293 1302anti-parallel
Strand 9
E
1305 1306anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1310 1315first strand
Strand 2
C
1293 1302anti-parallel
Strand 3
C
1252 1259anti-parallel
Strand 4
C
1271 1275anti-parallel
Strand 5
E
1345 1348parallel
Strand 6
E
1271 1275parallel
Strand 7
E
1252 1259anti-parallel
Strand 8
E
1293 1302anti-parallel
Strand 9
E
1310 1315anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1131 1137first strand
Strand 2
D
1143 1148anti-parallel
Strand 3
D
1180 1183anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1172 1176first strand
Strand 2
D
1156 1163anti-parallel
Strand 3
D
1191 1200anti-parallel
Strand 4
D
1203 1207anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1172 1176first strand
Strand 2
D
1156 1163anti-parallel
Strand 3
D
1191 1200anti-parallel
Strand 4
D
1211 1214anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1271 1275first strand
Strand 2
D
1252 1259anti-parallel
Strand 3
D
1293 1302anti-parallel
Strand 4
D
1305 1306anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1271 1275first strand
Strand 2
D
1252 1259anti-parallel
Strand 3
D
1293 1302anti-parallel
Strand 4
D
1310 1315anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1131 1137first strand
Strand 2
E
1143 1148anti-parallel
Strand 3
E
1180 1183anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1172 1176first strand
Strand 2
E
1156 1163anti-parallel
Strand 3
E
1191 1200anti-parallel
Strand 4
E
1203 1207anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1172 1176first strand
Strand 2
E
1156 1163anti-parallel
Strand 3
E
1191 1200anti-parallel
Strand 4
E
1211 1214anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1227 1230first strand
Strand 2
E
1236 1239anti-parallel
Strand 3
E
1282 1286anti-parallel
Strand 4
E
1334 1336parallel
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