Analysis of interatomic Contacts of Structural Units in PDB entry:
3F7W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F7W entry

There is 1 chain in PDB entry 3F7W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ALA 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3F7W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 13Right-handed alpha
Helix 2
2
A
55 68Right-handed alpha
Helix 3
3
A
97 114Right-handed alpha
Helix 4
4
A
139 149Right-handed alpha
Helix 5
5
A
149 159Right-handed alpha
Helix 6
6
A
163 176Right-handed alpha
Helix 7
7
A
176 181Right-handed alpha
Helix 8
8
A
195 197Right-handed 310
Helix 9
9
A
217 229Right-handed alpha
Helix 10
10
A
232 244Right-handed alpha
Helix 11
11
A
249 270Right-handed alpha
Helix 12
12
A
273 286Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3F7W. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 25first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
40 45anti-parallel
Strand 4
A
85 89anti-parallel
Strand 5
A
78 82anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
214 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
205 208anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il