Analysis of interatomic Contacts of Structural Units in PDB entry:
3F83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F83 entry

There is 1 chain in PDB entry 3F83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23ILE 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 3F83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
160 165Right-handed 310
Helix 2
2
A
200 204Right-handed 310
Helix 3
3
A
461 466Right-handed 310
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There are 8 sheets in PDB entry 3F83. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 40first strand
Strand 2
A
186 199parallel
Strand 3
A
169 180anti-parallel
Strand 4
A
98 106anti-parallel
Strand 5
A
112 124anti-parallel
Strand 6
A
150 157anti-parallel
Strand 7
A
48 58anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 40first strand
Strand 2
A
186 199parallel
Strand 3
A
169 180anti-parallel
Strand 4
A
69 72anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 301first strand
Strand 2
A
249 256anti-parallel
Strand 3
A
343 355anti-parallel
Strand 4
A
265 269anti-parallel
Strand 5
A
272 285anti-parallel
Strand 6
A
288 290anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
365 375parallel
Strand 3
A
343 355anti-parallel
Strand 4
A
265 269anti-parallel
Strand 5
A
272 285anti-parallel
Strand 6
A
324 338anti-parallel
Strand 7
A
228 240anti-parallel
Strand 8
A
222 225anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
228 240anti-parallel
Strand 3
A
324 338anti-parallel
Strand 4
A
308 310anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 383first strand
Strand 2
A
407 415anti-parallel
Strand 3
A
479 485anti-parallel
Strand 4
A
437 448anti-parallel
Strand 5
A
431 434anti-parallel
Strand 6
A
497 508anti-parallel
Strand 7
A
451 452first strand
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
515 526parallel
Strand 3
A
497 508anti-parallel
Strand 4
A
431 434anti-parallel
Strand 5
A
437 448anti-parallel
Strand 6
A
422 426first strand
Strand 7
A
458 460anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
403 404anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il