Analysis of interatomic Contacts of Structural Units in PDB entry:
3F84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F84 entry

There are 2 chains in PDB entry 3F84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 302
B
 MET 1HIS 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3F84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 89Right-handed alpha
Helix 2
2
A
235 240Right-handed 310
Helix 3
3
B
84 89Right-handed alpha
Helix 4
4
B
235 240Right-handed 310
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There are 11 sheets in PDB entry 3F84. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
30 38anti-parallel
Strand 3
A
102 108anti-parallel
Strand 4
A
60 71anti-parallel
Strand 5
A
54 57anti-parallel
Strand 6
A
120 132anti-parallel
Strand 7
A
74 75first strand
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
138 149parallel
Strand 3
A
120 132anti-parallel
Strand 4
A
54 57anti-parallel
Strand 5
A
60 71anti-parallel
Strand 6
A
45 49first strand
Strand 7
A
81 83anti-parallel
Strand 8
B
305 306anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
26 27anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
181 189anti-parallel
Strand 3
A
253 259anti-parallel
Strand 4
A
211 222anti-parallel
Strand 5
A
205 208anti-parallel
Strand 6
A
271 283anti-parallel
Strand 7
A
225 226first strand
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
288 300parallel
Strand 3
A
271 283anti-parallel
Strand 4
A
205 208anti-parallel
Strand 5
A
211 222anti-parallel
Strand 6
A
196 200first strand
Strand 7
A
232 234anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
177 178anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
30 38anti-parallel
Strand 3
B
102 108anti-parallel
Strand 4
B
64 71anti-parallel
Strand 5
B
54 57anti-parallel
Strand 6
B
120 132anti-parallel
Strand 7
B
74 75first strand
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
138 149parallel
Strand 3
B
120 132anti-parallel
Strand 4
B
54 57anti-parallel
Strand 5
B
64 71anti-parallel
Strand 6
B
45 49first strand
Strand 7
B
81 83anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 157first strand
Strand 2
B
181 189anti-parallel
Strand 3
B
253 259anti-parallel
Strand 4
B
215 222anti-parallel
Strand 5
B
205 208anti-parallel
Strand 6
B
271 283anti-parallel
Strand 7
B
225 226first strand
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 169first strand
Strand 2
B
289 300parallel
Strand 3
B
271 283anti-parallel
Strand 4
B
205 208anti-parallel
Strand 5
B
215 222anti-parallel
Strand 6
B
196 200first strand
Strand 7
B
232 234anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
177 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il