Analysis of interatomic Contacts of Structural Units in PDB entry:
3F87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F87 entry

There are 40 chains in PDB entry 3F87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1ARG 1
A
 LYS 3GLN 4
A
 GLU 6LYS 8
A
 GLU 10GLU 11
A
 LEU 13LYS 15
A
 TYR 17HIS 18
A
 GLU 20GLU 22
A
 ALA 24ARG 25
A
 LYS 27LEU 29
A
 GLY 31GLU 32
B
 ARG 1ARG 1
B
 LYS 3GLN 4
B
 GLU 6LYS 8
B
 GLU 10GLU 11
B
 LEU 13LYS 15
B
 TYR 17HIS 18
B
 GLU 20GLU 22
B
 ALA 24ARG 25
B
 LYS 27LEU 29
B
 GLY 31GLU 32
C
 ARG 1ARG 1
C
 LYS 3GLN 4
C
 GLU 6LYS 8
C
 GLU 10GLU 11
C
 LEU 13LYS 15
C
 TYR 17HIS 18
C
 GLU 20GLU 22
C
 ALA 24ARG 25
C
 LYS 27LEU 29
C
 GLY 31GLU 32
D
 ARG 1ARG 1
D
 LYS 3GLN 4
D
 GLU 6LYS 8
D
 GLU 10GLU 11
D
 LEU 13LYS 15
D
 TYR 17HIS 18
D
 GLU 20GLU 22
D
 ALA 24ARG 25
D
 LYS 27LEU 29
D
 GLY 31GLU 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3F87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 32Right-handed alpha
Helix 2
2
B
1 32Right-handed alpha
Helix 3
3
C
1 31Right-handed alpha
Helix 4
4
D
1 31Right-handed alpha
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There are no sheets in PDB entry 3F87
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il