Analysis of interatomic Contacts of Structural Units in PDB entry:
3F88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F88 entry

There are 4 chains in PDB entry 3F88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 35SER 215
A
 ILE 217ARG 383
B
 SER 35SER 215
B
 ILE 217ARG 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3F88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 102Right-handed alpha
Helix 2
2
A
139 149Right-handed alpha
Helix 3
3
A
154 175Right-handed alpha
Helix 4
4
A
183 185Right-handed 310
Helix 5
5
A
224 229Right-handed alpha
Helix 6
6
A
237 253Right-handed alpha
Helix 7
7
A
263 274Right-handed alpha
Helix 8
8
A
277 283Right-handed alpha
Helix 9
9
A
300 304Right-handed 310
Helix 10
10
A
310 319Right-handed alpha
Helix 11
11
A
324 328Right-handed 310
Helix 12
12
A
330 336Right-handed alpha
Helix 13
13
A
337 345Right-handed 310
Helix 14
14
B
95 102Right-handed alpha
Helix 15
15
B
139 148Right-handed alpha
Helix 16
16
B
154 175Right-handed alpha
Helix 17
17
B
183 185Right-handed 310
Helix 18
18
B
224 229Right-handed alpha
Helix 19
19
B
236 253Right-handed alpha
Helix 20
20
B
263 274Right-handed alpha
Helix 21
21
B
277 285Right-handed alpha
Helix 22
22
B
300 304Right-handed 310
Helix 23
23
B
310 319Right-handed alpha
Helix 24
24
B
330 337Right-handed alpha
Helix 25
25
B
338 345Right-handed 310
Helix 26
26
B
373 378Right-handed alpha
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There are 6 sheets in PDB entry 3F88. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 44first strand
Strand 2
A
52 65anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
81 88anti-parallel
Strand 5
A
127 133anti-parallel
Strand 6
A
112 118anti-parallel
Strand 7
A
38 44anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
187 190anti-parallel
Strand 3
A
195 198anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
205 206anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 44first strand
Strand 2
B
52 65anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
81 88anti-parallel
Strand 5
B
127 133anti-parallel
Strand 6
B
112 118anti-parallel
Strand 7
B
37 44anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
187 190anti-parallel
Strand 3
B
195 198anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
205 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il