Analysis of interatomic Contacts of Structural Units in PDB entry:
3F8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3F8D entry

There are 4 chains in PDB entry 3F8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 10	LYS 319
B	VAL 10	LYS 319
C	VAL 10	LYS 319
D	GLY 13	GLU 318

There are 37 helices in PDB entry 3F8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	24	37	Right-handed alpha
Helix 2	2	A	49	55	Right-handed 310
Helix 3	3	A	69	82	Right-handed alpha
Helix 4	4	A	144	149	Right-handed alpha
Helix 5	5	A	150	153	Right-handed 310
Helix 6	6	A	163	177	Right-handed alpha
Helix 7	7	A	192	201	Right-handed alpha
Helix 8	8	A	252	259	Right-handed alpha
Helix 9	9	A	297	319	Right-handed alpha
Helix 10	10	B	24	37	Right-handed alpha
Helix 11	11	B	49	55	Right-handed 310
Helix 12	12	B	69	83	Right-handed alpha
Helix 13	13	B	144	149	Right-handed alpha
Helix 14	14	B	150	153	Right-handed 310
Helix 15	15	B	163	175	Right-handed alpha
Helix 16	16	B	192	201	Right-handed alpha
Helix 17	17	B	252	259	Right-handed alpha
Helix 18	18	B	297	319	Right-handed alpha
Helix 19	19	C	24	37	Right-handed alpha
Helix 20	20	C	49	55	Right-handed 310
Helix 21	21	C	69	82	Right-handed alpha
Helix 22	22	C	144	149	Right-handed alpha
Helix 23	23	C	150	153	Right-handed 310
Helix 24	24	C	163	177	Right-handed alpha
Helix 25	25	C	192	201	Right-handed alpha
Helix 26	26	C	252	259	Right-handed alpha
Helix 27	27	C	297	319	Right-handed alpha
Helix 28	28	D	24	37	Right-handed alpha
Helix 29	29	D	49	55	Right-handed 310
Helix 30	30	D	69	83	Right-handed alpha
Helix 31	31	D	132	137	Right-handed alpha
Helix 32	32	D	144	149	Right-handed alpha
Helix 33	33	D	150	153	Right-handed 310
Helix 34	34	D	163	175	Right-handed alpha
Helix 35	35	D	192	201	Right-handed alpha
Helix 36	36	D	252	259	Right-handed alpha
Helix 37	37	D	297	318	Right-handed alpha

There are 24 sheets in PDB entry 3F8D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	41	45	parallel
Strand 3	A	15	21	parallel
Strand 4	A	111	119	parallel
Strand 5	A	102	106	anti-parallel
Strand 6	A	92	96	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	41	45	parallel
Strand 3	A	15	21	parallel
Strand 4	A	111	119	parallel
Strand 5	A	282	284	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	67	68	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	249	250	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	242	245	parallel
Strand 3	A	156	160	parallel
Strand 4	A	179	183	parallel
Strand 5	A	205	208	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	218	first strand
Strand 2	A	222	229	anti-parallel
Strand 3	A	235	239	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	41	45	parallel
Strand 3	B	15	21	parallel
Strand 4	B	111	119	parallel
Strand 5	B	102	106	anti-parallel
Strand 6	B	92	97	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	41	45	parallel
Strand 3	B	15	21	parallel
Strand 4	B	111	119	parallel
Strand 5	B	282	284	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	67	68	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	125	first strand
Strand 2	B	249	250	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	242	245	parallel
Strand 3	B	156	160	parallel
Strand 4	B	179	183	parallel
Strand 5	B	205	208	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	218	first strand
Strand 2	B	222	229	anti-parallel
Strand 3	B	235	239	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	41	45	parallel
Strand 3	C	15	21	parallel
Strand 4	C	111	119	parallel
Strand 5	C	102	106	anti-parallel
Strand 6	C	92	96	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	41	45	parallel
Strand 3	C	15	21	parallel
Strand 4	C	111	119	parallel
Strand 5	C	282	284	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	67	68	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	125	first strand
Strand 2	C	249	250	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	242	245	parallel
Strand 3	C	156	160	parallel
Strand 4	C	179	183	parallel
Strand 5	C	205	208	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	218	first strand
Strand 2	C	222	229	anti-parallel
Strand 3	C	235	239	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	41	45	parallel
Strand 3	D	15	21	parallel
Strand 4	D	111	119	parallel
Strand 5	D	102	106	anti-parallel
Strand 6	D	92	97	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	41	45	parallel
Strand 3	D	15	21	parallel
Strand 4	D	111	119	parallel
Strand 5	D	282	284	parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	67	68	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	249	250	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	242	245	parallel
Strand 3	D	156	160	parallel
Strand 4	D	179	184	parallel
Strand 5	D	205	209	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	218	first strand
Strand 2	D	222	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3F8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
3F8D