Analysis of interatomic Contacts of Structural Units in PDB entry:
3F8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F8L entry

There are 4 chains in PDB entry 3F8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 76ALA 237
B
 ALA 75SER 244
C
 ILE 76ALA 237
D
 ILE 76ALA 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3F8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 92Right-handed alpha
Helix 2
2
A
109 117Right-handed alpha
Helix 3
3
A
148 150Right-handed 310
Helix 4
4
A
152 157Right-handed alpha
Helix 5
5
A
162 170Right-handed alpha
Helix 6
6
A
187 195Right-handed alpha
Helix 7
7
B
84 92Right-handed alpha
Helix 8
8
B
109 117Right-handed alpha
Helix 9
9
B
148 150Right-handed 310
Helix 10
10
B
152 157Right-handed alpha
Helix 11
11
B
162 169Right-handed alpha
Helix 12
12
B
187 195Right-handed alpha
Helix 13
13
C
84 92Right-handed alpha
Helix 14
14
C
109 117Right-handed alpha
Helix 15
15
C
148 150Right-handed 310
Helix 16
16
C
152 157Right-handed alpha
Helix 17
17
C
162 170Right-handed alpha
Helix 18
18
C
187 195Right-handed alpha
Helix 19
19
D
84 92Right-handed alpha
Helix 20
20
D
109 117Right-handed alpha
Helix 21
21
D
148 150Right-handed 310
Helix 22
22
D
152 157Right-handed alpha
Helix 23
23
D
162 170Right-handed alpha
Helix 24
24
D
187 195Right-handed alpha
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There are 4 sheets in PDB entry 3F8L. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
230 236parallel
Strand 3
C
176 184anti-parallel
Strand 4
C
202 210anti-parallel
Strand 5
C
216 225anti-parallel
Strand 6
C
136 146anti-parallel
Strand 7
C
123 133anti-parallel
Strand 8
C
96 107anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 107first strand
Strand 2
A
123 133anti-parallel
Strand 3
A
136 146anti-parallel
Strand 4
A
216 225anti-parallel
Strand 5
A
202 210anti-parallel
Strand 6
A
176 184anti-parallel
Strand 7
C
230 236anti-parallel
Strand 8
C
77 79parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 79first strand
Strand 2
B
229 236parallel
Strand 3
D
176 184anti-parallel
Strand 4
D
202 210anti-parallel
Strand 5
D
216 225anti-parallel
Strand 6
D
136 146anti-parallel
Strand 7
D
123 133anti-parallel
Strand 8
D
96 107anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 107first strand
Strand 2
B
123 133anti-parallel
Strand 3
B
136 146anti-parallel
Strand 4
B
216 225anti-parallel
Strand 5
B
202 210anti-parallel
Strand 6
B
176 184anti-parallel
Strand 7
D
230 236anti-parallel
Strand 8
D
77 79parallel
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