Analysis of interatomic Contacts of Structural Units in PDB entry:
3F8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F8M entry

There are 2 chains in PDB entry 3F8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 10ASN 239
B
 VAL 14LYS 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3F8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 26Right-handed alpha
Helix 2
2
A
34 42Right-handed alpha
Helix 3
3
A
45 59Right-handed alpha
Helix 4
4
A
84 91Right-handed alpha
Helix 5
5
A
109 117Right-handed alpha
Helix 6
6
A
148 150Right-handed 310
Helix 7
7
A
152 157Right-handed alpha
Helix 8
8
A
162 170Right-handed alpha
Helix 9
9
A
187 195Right-handed alpha
Helix 10
10
B
14 26Right-handed alpha
Helix 11
11
B
34 42Right-handed alpha
Helix 12
12
B
45 59Right-handed alpha
Helix 13
13
B
84 91Right-handed alpha
Helix 14
14
B
109 117Right-handed alpha
Helix 15
15
B
148 150Right-handed 310
Helix 16
16
B
152 157Right-handed alpha
Helix 17
17
B
162 170Right-handed alpha
Helix 18
18
B
187 194Right-handed alpha
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There are 4 sheets in PDB entry 3F8M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
68 71anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
229 236parallel
Strand 3
B
176 184anti-parallel
Strand 4
B
202 210anti-parallel
Strand 5
B
216 225anti-parallel
Strand 6
B
136 146anti-parallel
Strand 7
B
123 133anti-parallel
Strand 8
B
96 107anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 107first strand
Strand 2
A
123 133anti-parallel
Strand 3
A
136 146anti-parallel
Strand 4
A
216 225anti-parallel
Strand 5
A
202 210anti-parallel
Strand 6
A
176 184anti-parallel
Strand 7
B
229 236anti-parallel
Strand 8
B
76 79parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 65first strand
Strand 2
B
68 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il