Analysis of interatomic Contacts of Structural Units in PDB entry:
3F8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F8T entry

There is 1 chain in PDB entry 3F8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 18GLN 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3F8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 26Right-handed alpha
Helix 2
2
A
29 38Right-handed alpha
Helix 3
3
A
39 48Right-handed alpha
Helix 4
4
A
49 52Right-handed 310
Helix 5
5
A
60 62Right-handed 310
Helix 6
6
A
63 73Right-handed alpha
Helix 7
7
A
73 89Right-handed alpha
Helix 8
8
A
102 106Right-handed 310
Helix 9
9
A
111 115Right-handed 310
Helix 10
10
A
189 202Right-handed alpha
Helix 11
11
A
203 213Right-handed alpha
Helix 12
12
A
218 230Right-handed alpha
Helix 13
13
A
235 239Right-handed 310
Helix 14
14
A
247 262Right-handed alpha
Helix 15
15
A
272 274Right-handed 310
Helix 16
16
A
275 280Right-handed alpha
Helix 17
17
A
294 299Right-handed alpha
Helix 18
18
A
313 327Right-handed alpha
Helix 19
19
A
356 361Right-handed 310
Helix 20
20
A
364 369Right-handed alpha
Helix 21
21
A
395 410Right-handed alpha
Helix 22
22
A
416 440Right-handed alpha
Helix 23
23
A
448 466Right-handed alpha
Helix 24
24
A
472 490Right-handed alpha
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There are 5 sheets in PDB entry 3F8T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
96 99parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 285first strand
Strand 2
A
289 293anti-parallel
Strand 3
A
118 130anti-parallel
Strand 4
A
160 168anti-parallel
Strand 5
A
171 180anti-parallel
Strand 6
A
145 149parallel
Strand 7
A
134 140anti-parallel
Strand 8
A
118 130anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 270first strand
Strand 2
A
303 307parallel
Strand 3
A
341 346parallel
Strand 4
A
242 245parallel
Strand 5
A
373 376parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
334 337anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 415first strand
Strand 2
A
470 471parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il