Analysis of interatomic Contacts of Structural Units in PDB entry:
3F8U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3F8U entry

There are 4 chains in PDB entry 3F8U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 25	GLU 493
B	GLY 1	GLU 381
C	SER 25	ILE 490
D	GLY 1	GLU 381

There are 44 helices in PDB entry 3F8U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	34	39	Right-handed alpha
Helix 2	2	A	57	74	Right-handed alpha
Helix 3	3	A	88	95	Right-handed alpha
Helix 4	4	A	120	132	Right-handed alpha
Helix 5	5	A	141	149	Right-handed alpha
Helix 6	6	A	165	179	Right-handed alpha
Helix 7	7	A	189	197	Right-handed alpha
Helix 8	8	A	208	212	Right-handed 310
Helix 9	9	A	228	240	Right-handed alpha
Helix 10	10	A	251	256	Right-handed alpha
Helix 11	11	A	272	293	Right-handed alpha
Helix 12	12	A	307	312	Right-handed alpha
Helix 13	13	A	313	315	Right-handed 310
Helix 14	14	A	346	359	Right-handed alpha
Helix 15	15	A	385	391	Right-handed alpha
Helix 16	16	A	406	423	Right-handed alpha
Helix 17	17	A	472	484	Right-handed alpha
Helix 18	18	B	53	62	Right-handed alpha
Helix 19	19	B	83	90	Right-handed 310
Helix 20	20	B	98	100	Right-handed 310
Helix 21	21	B	242	246	Right-handed 310
Helix 22	22	B	352	356	Right-handed 310
Helix 23	23	C	34	39	Right-handed alpha
Helix 24	24	C	57	74	Right-handed alpha
Helix 25	25	C	88	95	Right-handed alpha
Helix 26	26	C	120	132	Right-handed alpha
Helix 27	27	C	141	149	Right-handed alpha
Helix 28	28	C	165	179	Right-handed alpha
Helix 29	29	C	189	197	Right-handed alpha
Helix 30	30	C	208	212	Right-handed 310
Helix 31	31	C	228	240	Right-handed alpha
Helix 32	32	C	251	256	Right-handed alpha
Helix 33	33	C	272	293	Right-handed alpha
Helix 34	34	C	307	312	Right-handed alpha
Helix 35	35	C	313	315	Right-handed 310
Helix 36	36	C	346	359	Right-handed alpha
Helix 37	37	C	385	391	Right-handed alpha
Helix 38	38	C	406	423	Right-handed alpha
Helix 39	39	C	472	484	Right-handed alpha
Helix 40	40	D	53	62	Right-handed alpha
Helix 41	41	D	83	90	Right-handed 310
Helix 42	42	D	98	100	Right-handed 310
Helix 43	43	D	242	246	Right-handed 310
Helix 44	44	D	352	356	Right-handed 310

There are 22 sheets in PDB entry 3F8U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	80	84	parallel
Strand 3	A	47	53	parallel
Strand 4	A	102	107	anti-parallel
Strand 5	A	110	114	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	B	95	96	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	139	first strand
Strand 2	A	184	187	parallel
Strand 3	A	155	160	parallel
Strand 4	A	201	206	anti-parallel
Strand 5	A	219	221	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	298	303	parallel
Strand 3	A	260	265	parallel
Strand 4	A	325	329	anti-parallel
Strand 5	A	335	337	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	381	first strand
Strand 2	A	429	435	parallel
Strand 3	A	396	402	parallel
Strand 4	A	452	456	anti-parallel
Strand 5	A	465	466	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	230	238	anti-parallel
Strand 3	B	161	164	anti-parallel
Strand 4	B	133	143	anti-parallel
Strand 5	B	216	221	first strand

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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	230	238	anti-parallel
Strand 3	B	114	121	first strand
Strand 4	B	103	109	anti-parallel
Strand 5	B	70	76	anti-parallel
Strand 6	B	4	9	parallel
Strand 7	B	21	26	anti-parallel
Strand 8	B	45	49	parallel
Strand 9	B	133	143	parallel
Strand 10	B	216	221	first strand

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	258	269	parallel
Strand 3	B	247	255	anti-parallel
Strand 4	B	183	190	anti-parallel
Strand 5	B	193	200	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	293	300	anti-parallel
Strand 3	B	340	347	anti-parallel
Strand 4	B	326	329	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	293	300	anti-parallel
Strand 3	B	340	347	anti-parallel
Strand 4	B	333	334	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	307	313	anti-parallel
Strand 3	B	359	365	anti-parallel
Strand 4	B	374	379	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	80	84	parallel
Strand 3	C	47	53	parallel
Strand 4	C	102	107	anti-parallel
Strand 5	C	110	114	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	D	95	96	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	139	first strand
Strand 2	C	184	187	parallel
Strand 3	C	155	160	parallel
Strand 4	C	201	206	anti-parallel
Strand 5	C	219	221	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	298	303	parallel
Strand 3	C	260	265	parallel
Strand 4	C	325	329	anti-parallel
Strand 5	C	335	337	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	381	first strand
Strand 2	C	429	435	parallel
Strand 3	C	396	402	parallel
Strand 4	C	452	456	anti-parallel
Strand 5	C	465	466	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	230	238	anti-parallel
Strand 3	D	161	164	anti-parallel
Strand 4	D	133	143	anti-parallel
Strand 5	D	216	221	first strand

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There are 10 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	230	238	anti-parallel
Strand 3	D	114	121	first strand
Strand 4	D	103	109	anti-parallel
Strand 5	D	70	76	anti-parallel
Strand 6	D	4	9	parallel
Strand 7	D	21	26	anti-parallel
Strand 8	D	45	49	parallel
Strand 9	D	133	143	parallel
Strand 10	D	216	221	first strand

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	151	first strand
Strand 2	D	258	269	parallel
Strand 3	D	247	255	anti-parallel
Strand 4	D	183	190	anti-parallel
Strand 5	D	193	200	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	277	first strand
Strand 2	D	293	300	anti-parallel
Strand 3	D	340	347	anti-parallel
Strand 4	D	326	329	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	277	first strand
Strand 2	D	293	300	anti-parallel
Strand 3	D	340	347	anti-parallel
Strand 4	D	333	334	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	313	first strand
Strand 2	D	359	365	anti-parallel
Strand 3	D	374	379	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3F8U

Analysis of interatomic Contacts of Structural Units in PDB entry:
3F8U