Analysis of interatomic Contacts of Structural Units in PDB entry:
3F8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F8W entry

There are 3 chains in PDB entry 3F8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4LYS 286
B
 SER 4ASP 287
C
 VAL 5ASP 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3F8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 23Right-handed alpha
Helix 2
2
A
37 42Right-handed 310
Helix 3
3
A
51 55Right-handed 310
Helix 4
4
A
88 92Right-handed 310
Helix 5
5
A
94 109Right-handed alpha
Helix 6
6
A
140 144Right-handed alpha
Helix 7
7
A
169 183Right-handed alpha
Helix 8
8
A
184 187Right-handed 310
Helix 9
9
A
204 214Right-handed alpha
Helix 10
10
A
223 233Right-handed alpha
Helix 11
11
A
258 284Right-handed alpha
Helix 12
12
B
8 23Right-handed alpha
Helix 13
13
B
37 42Right-handed 310
Helix 14
14
B
53 55Right-handed 310
Helix 15
15
B
88 92Right-handed 310
Helix 16
16
B
94 109Right-handed alpha
Helix 17
17
B
140 144Right-handed alpha
Helix 18
18
B
169 183Right-handed alpha
Helix 19
19
B
185 187Right-handed 310
Helix 20
20
B
204 214Right-handed alpha
Helix 21
21
B
223 233Right-handed alpha
Helix 22
22
B
258 283Right-handed alpha
Helix 23
23
C
8 23Right-handed alpha
Helix 24
24
C
37 42Right-handed 310
Helix 25
25
C
53 55Right-handed 310
Helix 26
26
C
88 92Right-handed 310
Helix 27
27
C
94 109Right-handed alpha
Helix 28
28
C
140 144Right-handed alpha
Helix 29
29
C
169 183Right-handed alpha
Helix 30
30
C
185 187Right-handed 310
Helix 31
31
C
204 214Right-handed alpha
Helix 32
32
C
223 233Right-handed alpha
Helix 33
33
C
258 284Right-handed alpha
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There are 3 sheets in PDB entry 3F8W. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
69 75anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
29 33parallel
Strand 5
A
112 121parallel
Strand 6
A
236 246parallel
Strand 7
A
131 139anti-parallel
Strand 8
A
189 196parallel
Strand 9
A
218 220parallel
Strand 10
A
112 121anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 51first strand
Strand 2
B
69 75anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
29 33parallel
Strand 5
B
112 121parallel
Strand 6
B
236 246parallel
Strand 7
B
131 139anti-parallel
Strand 8
B
189 196parallel
Strand 9
B
218 220parallel
Strand 10
B
112 121anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 51first strand
Strand 2
C
69 75anti-parallel
Strand 3
C
78 84anti-parallel
Strand 4
C
29 33parallel
Strand 5
C
112 121parallel
Strand 6
C
236 246parallel
Strand 7
C
131 139anti-parallel
Strand 8
C
189 196parallel
Strand 9
C
218 220parallel
Strand 10
C
112 121anti-parallel
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