Analysis of interatomic Contacts of Structural Units in PDB entry:
3F98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F98 entry

There are 3 chains in PDB entry 3F98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 49THR 425
B
 ALA 49THR 425
C
 ALA 49THR 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3F98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
100 112Right-handed alpha
Helix 2
2
A
115 126Right-handed alpha
Helix 3
3
A
160 170Right-handed alpha
Helix 4
4
A
192 199Right-handed alpha
Helix 5
5
A
210 241Right-handed alpha
Helix 6
6
A
254 259Right-handed 310
Helix 7
7
A
273 286Right-handed alpha
Helix 8
8
A
303 310Right-handed 310
Helix 9
9
A
324 333Right-handed alpha
Helix 10
10
A
350 360Right-handed 310
Helix 11
11
A
362 369Right-handed alpha
Helix 12
12
A
376 397Right-handed alpha
Helix 13
13
A
401 404Right-handed 310
Helix 14
14
A
405 410Right-handed alpha
Helix 15
15
B
100 112Right-handed alpha
Helix 16
16
B
115 126Right-handed alpha
Helix 17
17
B
160 170Right-handed alpha
Helix 18
18
B
192 199Right-handed alpha
Helix 19
19
B
210 241Right-handed alpha
Helix 20
20
B
254 259Right-handed 310
Helix 21
21
B
273 286Right-handed alpha
Helix 22
22
B
303 310Right-handed 310
Helix 23
23
B
324 333Right-handed alpha
Helix 24
24
B
350 360Right-handed 310
Helix 25
25
B
362 369Right-handed alpha
Helix 26
26
B
376 397Right-handed alpha
Helix 27
27
B
401 404Right-handed 310
Helix 28
28
B
405 410Right-handed alpha
Helix 29
29
C
100 112Right-handed alpha
Helix 30
30
C
115 126Right-handed alpha
Helix 31
31
C
160 170Right-handed alpha
Helix 32
32
C
192 199Right-handed alpha
Helix 33
33
C
210 241Right-handed alpha
Helix 34
34
C
254 259Right-handed 310
Helix 35
35
C
273 286Right-handed alpha
Helix 36
36
C
303 310Right-handed 310
Helix 37
37
C
324 333Right-handed alpha
Helix 38
38
C
350 360Right-handed 310
Helix 39
39
C
362 369Right-handed alpha
Helix 40
40
C
376 397Right-handed alpha
Helix 41
41
C
401 404Right-handed 310
Helix 42
42
C
405 410Right-handed alpha
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There are 9 sheets in PDB entry 3F98. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
64 72parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
173 177anti-parallel
Strand 5
A
144 150parallel
Strand 6
A
262 271parallel
Strand 7
A
291 295parallel
Strand 8
A
314 319parallel
Strand 9
A
341 346parallel
Strand 10
A
416 418anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
129 130anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
202 205anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
64 72parallel
Strand 3
B
79 87anti-parallel
Strand 4
B
173 177anti-parallel
Strand 5
B
144 150parallel
Strand 6
B
262 271parallel
Strand 7
B
291 295parallel
Strand 8
B
314 319parallel
Strand 9
B
341 346parallel
Strand 10
B
416 418anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
129 130anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 189first strand
Strand 2
B
202 205anti-parallel
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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 134first strand
Strand 2
C
64 72parallel
Strand 3
C
79 87anti-parallel
Strand 4
C
173 177anti-parallel
Strand 5
C
144 150parallel
Strand 6
C
262 271parallel
Strand 7
C
291 295parallel
Strand 8
C
314 319parallel
Strand 9
C
341 346parallel
Strand 10
C
416 418anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 96first strand
Strand 2
C
129 130anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
186 189first strand
Strand 2
C
202 205anti-parallel
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