Analysis of interatomic Contacts of Structural Units in PDB entry:
3F9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F9B entry

There is 1 chain in PDB entry 3F9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 187SER 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 3F9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
190 208Right-handed alpha
Helix 2
2
A
263 265Right-handed 310
Helix 3
3
A
266 277Right-handed alpha
Helix 4
4
A
287 293Right-handed alpha
Helix 5
5
A
294 297Right-handed 310
Helix 6
6
A
361 387Right-handed alpha
Helix 7
7
A
388 393Right-handed 310
Helix 8
8
A
408 421Right-handed alpha
Helix 9
9
A
428 440Right-handed alpha
Helix 10
10
A
447 461Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 3F9B.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 251first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
400 402parallel
Strand 4
A
282 284parallel
Strand 5
A
344 351parallel
Strand 6
A
327 337anti-parallel
Strand 7
A
311 324anti-parallel
Strand 8
A
306 308anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il