Analysis of interatomic Contacts of Structural Units in PDB entry:
3F9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F9C entry

There are 2 chains in PDB entry 3F9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 54THR 425
B
 THR 54ASN 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 3F9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
100 111Right-handed alpha
Helix 2
2
A
114 126Right-handed alpha
Helix 3
3
A
160 169Right-handed alpha
Helix 4
4
A
192 199Right-handed alpha
Helix 5
5
A
210 212Right-handed 310
Helix 6
6
A
213 241Right-handed alpha
Helix 7
7
A
254 259Right-handed 310
Helix 8
8
A
273 273Right-handed alpha
Helix 9
9
A
274 286Right-handed alpha
Helix 10
10
A
303 310Right-handed 310
Helix 11
11
A
324 333Right-handed alpha
Helix 12
12
A
350 360Right-handed 310
Helix 13
13
A
362 370Right-handed alpha
Helix 14
14
A
376 397Right-handed alpha
Helix 15
15
A
401 409Right-handed 310
Helix 16
16
B
100 112Right-handed alpha
Helix 17
17
B
114 126Right-handed alpha
Helix 18
18
B
160 170Right-handed alpha
Helix 19
19
B
192 199Right-handed alpha
Helix 20
20
B
210 212Right-handed 310
Helix 21
21
B
213 241Right-handed alpha
Helix 22
22
B
254 259Right-handed 310
Helix 23
23
B
273 273Right-handed alpha
Helix 24
24
B
274 286Right-handed alpha
Helix 25
25
B
305 309Right-handed 310
Helix 26
26
B
324 333Right-handed alpha
Helix 27
27
B
350 360Right-handed 310
Helix 28
28
B
362 369Right-handed alpha
Helix 29
29
B
376 397Right-handed alpha
Helix 30
30
B
401 404Right-handed 310
Helix 31
31
B
405 411Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3F9C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
64 72parallel
Strand 3
A
79 87anti-parallel
Strand 4
A
173 177anti-parallel
Strand 5
A
144 150parallel
Strand 6
A
262 271parallel
Strand 7
A
291 295parallel
Strand 8
A
314 319parallel
Strand 9
A
341 346parallel
Strand 10
A
416 418anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
202 205anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
64 72parallel
Strand 3
B
79 87anti-parallel
Strand 4
B
173 177anti-parallel
Strand 5
B
144 150parallel
Strand 6
B
262 271parallel
Strand 7
B
291 295parallel
Strand 8
B
314 319parallel
Strand 9
B
341 346parallel
Strand 10
B
416 418anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 189first strand
Strand 2
B
202 205anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il