Analysis of interatomic Contacts of Structural Units in PDB entry:
3F9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F9P entry

There are 6 chains in PDB entry 3F9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 0ARG 106
C
 VAL 113SER 149
C
 PRO 151SER 579
B
 THR 0ALA 107
D
 VAL 113SER 149
D
 PRO 151SER 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 3F9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 68Right-handed alpha
Helix 2
2
A
72 76Right-handed 310
Helix 3
3
A
84 98Right-handed alpha
Helix 4
4
C
173 178Right-handed alpha
Helix 5
5
C
180 187Right-handed alpha
Helix 6
6
C
220 225Right-handed alpha
Helix 7
7
C
243 268Right-handed alpha
Helix 8
8
C
272 295Right-handed alpha
Helix 9
9
C
296 310Right-handed alpha
Helix 10
10
C
325 332Right-handed alpha
Helix 11
11
C
333 338Right-handed 310
Helix 12
12
C
362 364Right-handed 310
Helix 13
13
C
368 373Right-handed alpha
Helix 14
14
C
376 387Right-handed alpha
Helix 15
15
C
399 404Right-handed alpha
Helix 16
16
C
416 428Right-handed alpha
Helix 17
17
C
432 441Right-handed alpha
Helix 18
18
C
447 456Right-handed alpha
Helix 19
19
C
457 469Right-handed alpha
Helix 20
20
C
475 483Right-handed alpha
Helix 21
21
C
492 509Right-handed alpha
Helix 22
22
C
521 529Right-handed alpha
Helix 23
23
C
532 541Right-handed alpha
Helix 24
24
C
565 567Right-handed 310
Helix 25
25
C
572 576Right-handed 310
Helix 26
26
B
60 68Right-handed alpha
Helix 27
27
B
72 76Right-handed 310
Helix 28
28
B
84 98Right-handed alpha
Helix 29
29
D
173 178Right-handed alpha
Helix 30
30
D
180 187Right-handed alpha
Helix 31
31
D
220 224Right-handed 310
Helix 32
32
D
243 268Right-handed alpha
Helix 33
33
D
272 295Right-handed alpha
Helix 34
34
D
296 302Right-handed alpha
Helix 35
35
D
302 310Right-handed alpha
Helix 36
36
D
325 332Right-handed alpha
Helix 37
37
D
333 339Right-handed 310
Helix 38
38
D
362 364Right-handed 310
Helix 39
39
D
368 373Right-handed alpha
Helix 40
40
D
376 387Right-handed alpha
Helix 41
41
D
399 404Right-handed alpha
Helix 42
42
D
416 428Right-handed alpha
Helix 43
43
D
432 440Right-handed alpha
Helix 44
44
D
447 456Right-handed alpha
Helix 45
45
D
457 469Right-handed alpha
Helix 46
46
D
475 483Right-handed alpha
Helix 47
47
D
492 509Right-handed alpha
Helix 48
48
D
521 529Right-handed alpha
Helix 49
49
D
532 541Right-handed alpha
Helix 50
50
D
565 567Right-handed 310
Helix 51
51
D
572 576Right-handed 310
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There are 10 sheets in PDB entry 3F9P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
C
164 165anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
C
388 390anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 129first strand
Strand 2
C
143 144anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
342 344first strand
Strand 2
C
358 360anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
545 547first strand
Strand 2
C
561 563anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
D
164 165anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
D
388 390anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 129first strand
Strand 2
D
143 144anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
342 344first strand
Strand 2
D
358 360anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
545 547first strand
Strand 2
D
561 563anti-parallel
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