Analysis of interatomic Contacts of Structural Units in PDB entry:
3F9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F9T entry

There are 2 chains in PDB entry 3F9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 394
B
 ASN 3LYS 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3F9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
27 31Right-handed 310
Helix 3
3
A
43 53Right-handed alpha
Helix 4
4
A
59 62Right-handed 310
Helix 5
5
A
63 81Right-handed alpha
Helix 6
6
A
93 115Right-handed alpha
Helix 7
7
A
133 143Right-handed alpha
Helix 8
8
A
158 169Right-handed alpha
Helix 9
9
A
188 200Right-handed alpha
Helix 10
10
A
209 217Right-handed 310
Helix 11
11
A
218 222Right-handed 310
Helix 12
12
A
231 235Right-handed 310
Helix 13
13
A
260 267Right-handed 310
Helix 14
14
A
288 327Right-handed alpha
Helix 15
15
A
346 357Right-handed alpha
Helix 16
16
A
379 394Right-handed alpha
Helix 17
17
B
10 23Right-handed alpha
Helix 18
18
B
27 31Right-handed 310
Helix 19
19
B
43 53Right-handed alpha
Helix 20
20
B
59 62Right-handed 310
Helix 21
21
B
63 81Right-handed alpha
Helix 22
22
B
93 115Right-handed alpha
Helix 23
23
B
133 143Right-handed alpha
Helix 24
24
B
158 169Right-handed alpha
Helix 25
25
B
188 200Right-handed alpha
Helix 26
26
B
209 217Right-handed 310
Helix 27
27
B
218 222Right-handed 310
Helix 28
28
B
231 235Right-handed 310
Helix 29
29
B
260 267Right-handed 310
Helix 30
30
B
288 327Right-handed alpha
Helix 31
31
B
346 357Right-handed alpha
Helix 32
32
B
379 394Right-handed alpha
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There are 6 sheets in PDB entry 3F9T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
254 258anti-parallel
Strand 3
A
238 240anti-parallel
Strand 4
A
202 206parallel
Strand 5
A
173 177parallel
Strand 6
A
124 128parallel
Strand 7
A
145 149parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
278 279anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 343first strand
Strand 2
A
369 373anti-parallel
Strand 3
A
362 363anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
254 258anti-parallel
Strand 3
B
238 240anti-parallel
Strand 4
B
202 206parallel
Strand 5
B
173 177parallel
Strand 6
B
124 128parallel
Strand 7
B
145 149parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 270first strand
Strand 2
B
278 279anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 343first strand
Strand 2
B
369 373anti-parallel
Strand 3
B
362 363anti-parallel
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