Analysis of interatomic Contacts of Structural Units in PDB entry:
3F9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F9U entry

There are 2 chains in PDB entry 3F9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 525LYS 669
B
 TYR 522LYS 669
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 3F9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
532 543Right-handed alpha
Helix 2
2
A
556 566Right-handed alpha
Helix 3
3
A
569 580Right-handed alpha
Helix 4
4
A
611 624Right-handed alpha
Helix 5
5
A
650 668Right-handed alpha
Helix 6
6
B
532 543Right-handed alpha
Helix 7
7
B
556 566Right-handed alpha
Helix 8
8
B
569 580Right-handed alpha
Helix 9
9
B
611 624Right-handed alpha
Helix 10
10
B
650 667Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3F9U. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 586first strand
Strand 2
A
547 552parallel
Strand 3
A
630 634anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 601first strand
Strand 2
A
604 610anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
581 586first strand
Strand 2
B
547 552parallel
Strand 3
B
630 634anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
592 601first strand
Strand 2
B
604 610anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il