Analysis of interatomic Contacts of Structural Units in PDB entry:
3F9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3F9V entry

There is 1 chain in PDB entry 3F9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7GLY 601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3F9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 20Right-handed alpha
Helix 2
2
A
31 40Right-handed alpha
Helix 3
3
A
49 55Right-handed alpha
Helix 4
4
A
57 65Right-handed alpha
Helix 5
5
A
71 83Right-handed alpha
Helix 6
6
A
87 89Right-handed alpha
Helix 7
7
A
109 111Right-handed alpha
Helix 8
8
A
114 116Right-handed alpha
Helix 9
9
A
184 186Right-handed alpha
Helix 10
10
A
201 203Right-handed alpha
Helix 11
11
A
219 221Right-handed alpha
Helix 12
12
A
276 284Right-handed alpha
Helix 13
13
A
290 299Right-handed alpha
Helix 14
14
A
306 318Right-handed alpha
Helix 15
15
A
345 355Right-handed alpha
Helix 16
16
A
371 373Right-handed alpha
Helix 17
17
A
380 383Right-handed alpha
Helix 18
18
A
391 396Right-handed alpha
Helix 19
19
A
411 422Right-handed alpha
Helix 20
20
A
467 469Right-handed alpha
Helix 21
21
A
486 497Right-handed alpha
Helix 22
22
A
511 524Right-handed alpha
Helix 23
23
A
531 546Right-handed alpha
Helix 24
24
A
559 575Right-handed alpha
Helix 25
25
A
583 600Right-handed alpha
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There are 8 sheets in PDB entry 3F9V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
98 101parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
120 130parallel
Strand 3
A
152 154anti-parallel
Strand 4
A
212 218anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 139first strand
Strand 2
A
188 198anti-parallel
Strand 3
A
230 240anti-parallel
Strand 4
A
252 265anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
179 182anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
329 331anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 363first strand
Strand 2
A
399 404parallel
Strand 3
A
441 447parallel
Strand 4
A
334 340parallel
Strand 5
A
476 480parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 378first strand
Strand 2
A
386 390anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 429first strand
Strand 2
A
434 439anti-parallel
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