Analysis of interatomic Contacts of Structural Units in PDB entry:
3FBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3FBY entry

There are 3 chains in PDB entry 3FBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 223	ALA 757
B	ASN 223	ALA 757
C	ASN 223	ALA 757

There are 33 helices in PDB entry 3FBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	284	288	Right-handed 310
Helix 2	2	A	309	313	Right-handed 310
Helix 3	3	A	322	326	Right-handed 310
Helix 4	4	A	345	349	Right-handed 310
Helix 5	5	A	368	372	Right-handed 310
Helix 6	6	A	404	408	Right-handed 310
Helix 7	7	A	442	446	Right-handed 310
Helix 8	8	A	478	482	Right-handed 310
Helix 9	9	A	514	518	Right-handed 310
Helix 10	10	A	647	656	Right-handed alpha
Helix 11	11	A	690	692	Right-handed 310
Helix 12	12	A	747	755	Right-handed alpha
Helix 13	13	B	284	288	Right-handed 310
Helix 14	14	B	309	313	Right-handed 310
Helix 15	15	B	322	326	Right-handed 310
Helix 16	16	B	345	349	Right-handed 310
Helix 17	17	B	404	408	Right-handed 310
Helix 18	18	B	442	446	Right-handed 310
Helix 19	19	B	465	469	Right-handed 310
Helix 20	20	B	647	656	Right-handed alpha
Helix 21	21	B	747	755	Right-handed alpha
Helix 22	22	C	284	288	Right-handed 310
Helix 23	23	C	309	313	Right-handed 310
Helix 24	24	C	322	326	Right-handed 310
Helix 25	25	C	345	349	Right-handed 310
Helix 26	26	C	381	385	Right-handed 310
Helix 27	27	C	404	408	Right-handed 310
Helix 28	28	C	442	446	Right-handed 310
Helix 29	29	C	465	469	Right-handed 310
Helix 30	30	C	478	482	Right-handed 310
Helix 31	31	C	647	656	Right-handed alpha
Helix 32	32	C	747	754	Right-handed alpha
Helix 33	33	C	755	757	Right-handed 310

There are 18 sheets in PDB entry 3FBY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	245	first strand
Strand 2	A	251	255	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	260	first strand
Strand 2	A	267	268	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	538	first strand
Strand 2	A	569	577	anti-parallel
Strand 3	A	720	727	anti-parallel
Strand 4	A	596	605	anti-parallel
Strand 5	A	608	615	anti-parallel
Strand 6	A	636	641	anti-parallel
Strand 7	A	664	669	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	553	first strand
Strand 2	A	560	562	anti-parallel
Strand 3	A	732	741	anti-parallel
Strand 4	A	580	588	anti-parallel
Strand 5	A	681	689	anti-parallel
Strand 6	A	694	701	anti-parallel
Strand 7	A	704	708	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	553	first strand
Strand 2	A	560	562	anti-parallel
Strand 3	A	732	741	anti-parallel
Strand 4	A	580	588	anti-parallel
Strand 5	A	681	689	anti-parallel
Strand 6	A	694	701	anti-parallel
Strand 7	A	712	713	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	620	first strand
Strand 2	A	630	631	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	245	first strand
Strand 2	B	251	255	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	260	first strand
Strand 2	B	267	268	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	538	first strand
Strand 2	B	569	577	anti-parallel
Strand 3	B	720	727	anti-parallel
Strand 4	B	596	605	anti-parallel
Strand 5	B	608	615	anti-parallel
Strand 6	B	636	641	anti-parallel
Strand 7	B	664	669	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	551	554	first strand
Strand 2	B	559	562	anti-parallel
Strand 3	B	732	738	anti-parallel
Strand 4	B	580	588	anti-parallel
Strand 5	B	681	689	anti-parallel
Strand 6	B	694	701	anti-parallel
Strand 7	B	704	707	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	551	554	first strand
Strand 2	B	559	562	anti-parallel
Strand 3	B	732	738	anti-parallel
Strand 4	B	580	588	anti-parallel
Strand 5	B	681	689	anti-parallel
Strand 6	B	694	701	anti-parallel
Strand 7	B	712	713	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	620	first strand
Strand 2	B	630	631	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	245	first strand
Strand 2	C	251	255	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	266	268	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	538	first strand
Strand 2	C	569	577	anti-parallel
Strand 3	C	720	727	anti-parallel
Strand 4	C	596	605	anti-parallel
Strand 5	C	608	615	anti-parallel
Strand 6	C	636	641	anti-parallel
Strand 7	C	664	669	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	554	first strand
Strand 2	C	559	562	anti-parallel
Strand 3	C	732	741	anti-parallel
Strand 4	C	580	588	anti-parallel
Strand 5	C	681	689	anti-parallel
Strand 6	C	694	701	anti-parallel
Strand 7	C	704	708	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	554	first strand
Strand 2	C	559	562	anti-parallel
Strand 3	C	732	741	anti-parallel
Strand 4	C	580	588	anti-parallel
Strand 5	C	681	689	anti-parallel
Strand 6	C	694	701	anti-parallel
Strand 7	C	712	713	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	619	620	first strand
Strand 2	C	630	631	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3FBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
3FBY