Analysis of interatomic Contacts of Structural Units in PDB entry:
3FD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FD8 entry

There are 6 chains in PDB entry 3FD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLU 350
B
 LEU 3GLU 350
C
 LEU 3LYS 349
D
 SER 2GLU 350
E
 LEU 3ASN 351
F
 SER 2GLU 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 96 helices in PDB entry 3FD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 20Right-handed alpha
Helix 2
2
A
20 25Right-handed alpha
Helix 3
3
A
41 51Right-handed alpha
Helix 4
4
A
58 64Right-handed alpha
Helix 5
5
A
76 78Right-handed 310
Helix 6
6
A
79 90Right-handed alpha
Helix 7
7
A
103 118Right-handed alpha
Helix 8
8
A
125 129Right-handed 310
Helix 9
9
A
130 142Right-handed alpha
Helix 10
10
A
168 171Right-handed 310
Helix 11
11
A
172 177Right-handed alpha
Helix 12
12
A
177 190Right-handed alpha
Helix 13
13
A
255 261Right-handed alpha
Helix 14
14
A
275 279Right-handed 310
Helix 15
15
A
304 315Right-handed alpha
Helix 16
16
A
323 337Right-handed alpha
Helix 17
17
B
13 19Right-handed alpha
Helix 18
18
B
20 25Right-handed alpha
Helix 19
19
B
41 50Right-handed alpha
Helix 20
20
B
51 53Right-handed 310
Helix 21
21
B
58 64Right-handed alpha
Helix 22
22
B
76 78Right-handed 310
Helix 23
23
B
79 90Right-handed alpha
Helix 24
24
B
103 117Right-handed alpha
Helix 25
25
B
125 129Right-handed 310
Helix 26
26
B
130 143Right-handed alpha
Helix 27
27
B
168 171Right-handed 310
Helix 28
28
B
172 177Right-handed alpha
Helix 29
29
B
177 190Right-handed alpha
Helix 30
30
B
255 263Right-handed alpha
Helix 31
31
B
275 279Right-handed 310
Helix 32
32
B
303 317Right-handed alpha
Helix 33
33
B
323 337Right-handed alpha
Helix 34
34
C
13 19Right-handed alpha
Helix 35
35
C
20 25Right-handed alpha
Helix 36
36
C
41 51Right-handed alpha
Helix 37
37
C
59 65Right-handed alpha
Helix 38
38
C
76 78Right-handed 310
Helix 39
39
C
79 90Right-handed alpha
Helix 40
40
C
103 118Right-handed alpha
Helix 41
41
C
125 129Right-handed 310
Helix 42
42
C
130 143Right-handed alpha
Helix 43
43
C
168 171Right-handed 310
Helix 44
44
C
172 177Right-handed alpha
Helix 45
45
C
177 190Right-handed alpha
Helix 46
46
C
255 262Right-handed alpha
Helix 47
47
C
275 279Right-handed 310
Helix 48
48
C
304 317Right-handed alpha
Helix 49
49
C
323 337Right-handed alpha
Helix 50
50
D
13 20Right-handed alpha
Helix 51
51
D
20 25Right-handed alpha
Helix 52
52
D
41 51Right-handed alpha
Helix 53
53
D
58 64Right-handed alpha
Helix 54
54
D
76 78Right-handed 310
Helix 55
55
D
79 90Right-handed alpha
Helix 56
56
D
103 118Right-handed alpha
Helix 57
57
D
125 129Right-handed 310
Helix 58
58
D
130 143Right-handed alpha
Helix 59
59
D
168 171Right-handed 310
Helix 60
60
D
172 177Right-handed alpha
Helix 61
61
D
177 190Right-handed alpha
Helix 62
62
D
255 262Right-handed alpha
Helix 63
63
D
275 279Right-handed 310
Helix 64
64
D
303 317Right-handed alpha
Helix 65
65
D
323 337Right-handed alpha
Helix 66
66
E
13 20Right-handed alpha
Helix 67
67
E
20 25Right-handed alpha
Helix 68
68
E
41 50Right-handed alpha
Helix 69
69
E
58 64Right-handed alpha
Helix 70
70
E
76 78Right-handed 310
Helix 71
71
E
79 90Right-handed alpha
Helix 72
72
E
103 117Right-handed alpha
Helix 73
73
E
125 129Right-handed 310
Helix 74
74
E
130 143Right-handed alpha
Helix 75
75
E
168 171Right-handed 310
Helix 76
76
E
172 177Right-handed alpha
Helix 77
77
E
177 190Right-handed alpha
Helix 78
78
E
255 262Right-handed alpha
Helix 79
79
E
275 279Right-handed 310
Helix 80
80
E
304 316Right-handed alpha
Helix 81
81
E
323 337Right-handed alpha
Helix 82
82
F
13 20Right-handed alpha
Helix 83
83
F
20 25Right-handed alpha
Helix 84
84
F
41 50Right-handed alpha
Helix 85
85
F
59 65Right-handed alpha
Helix 86
86
F
76 78Right-handed 310
Helix 87
87
F
79 90Right-handed alpha
Helix 88
88
F
103 118Right-handed alpha
Helix 89
89
F
125 129Right-handed 310
Helix 90
90
F
130 143Right-handed alpha
Helix 91
91
F
168 171Right-handed 310
Helix 92
92
F
172 190Right-handed alpha
Helix 93
93
F
255 262Right-handed alpha
Helix 94
94
F
275 279Right-handed 310
Helix 95
95
F
304 315Right-handed alpha
Helix 96
96
F
323 337Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 3FD8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
30 36parallel
Strand 3
A
5 10parallel
Strand 4
A
70 73parallel
Strand 5
A
93 96parallel
Strand 6
A
121 123parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
211 218anti-parallel
Strand 3
A
222 229anti-parallel
Strand 4
A
148 154parallel
Strand 5
A
239 243anti-parallel
Strand 6
A
246 250anti-parallel
Strand 7
A
280 285anti-parallel
Strand 8
A
291 296anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
211 218anti-parallel
Strand 3
A
194 197anti-parallel
Strand 4
A
344 347anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
30 36parallel
Strand 3
B
5 10parallel
Strand 4
B
70 73parallel
Strand 5
B
93 96parallel
Strand 6
B
121 123parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
B
211 218anti-parallel
Strand 3
B
222 229anti-parallel
Strand 4
B
148 154parallel
Strand 5
B
239 243anti-parallel
Strand 6
B
246 250anti-parallel
Strand 7
B
280 285anti-parallel
Strand 8
B
291 296anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
B
211 218anti-parallel
Strand 3
B
194 197anti-parallel
Strand 4
B
344 347anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 56first strand
Strand 2
C
30 36parallel
Strand 3
C
5 10parallel
Strand 4
C
70 73parallel
Strand 5
C
93 96parallel
Strand 6
C
121 123parallel
Back to list of sheets
Back to top of page

There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 200first strand
Strand 2
C
211 218anti-parallel
Strand 3
C
222 228anti-parallel
Strand 4
C
148 154parallel
Strand 5
C
239 243anti-parallel
Strand 6
C
246 250anti-parallel
Strand 7
C
280 285anti-parallel
Strand 8
C
291 296anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 200first strand
Strand 2
C
211 218anti-parallel
Strand 3
C
194 197anti-parallel
Strand 4
C
344 347anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 56first strand
Strand 2
D
30 36parallel
Strand 3
D
5 10parallel
Strand 4
D
70 73parallel
Strand 5
D
93 96parallel
Strand 6
D
121 123parallel
Back to list of sheets
Back to top of page

There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
199 200first strand
Strand 2
D
211 218anti-parallel
Strand 3
D
222 229anti-parallel
Strand 4
D
148 154parallel
Strand 5
D
239 243anti-parallel
Strand 6
D
246 250anti-parallel
Strand 7
D
280 285anti-parallel
Strand 8
D
291 296anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
199 200first strand
Strand 2
D
211 218anti-parallel
Strand 3
D
194 197anti-parallel
Strand 4
D
344 347anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
54 56first strand
Strand 2
E
30 36parallel
Strand 3
E
5 10parallel
Strand 4
E
70 73parallel
Strand 5
E
93 96parallel
Strand 6
E
121 123parallel
Back to list of sheets
Back to top of page

There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
199 200first strand
Strand 2
E
211 218anti-parallel
Strand 3
E
222 228anti-parallel
Strand 4
E
148 154parallel
Strand 5
E
239 243anti-parallel
Strand 6
E
246 250anti-parallel
Strand 7
E
280 285anti-parallel
Strand 8
E
291 296anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
199 200first strand
Strand 2
E
211 218anti-parallel
Strand 3
E
194 197anti-parallel
Strand 4
E
344 347anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
54 56first strand
Strand 2
F
30 36parallel
Strand 3
F
5 10parallel
Strand 4
F
70 73parallel
Strand 5
F
93 96parallel
Strand 6
F
121 123parallel
Back to list of sheets
Back to top of page

There are 8 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
199 200first strand
Strand 2
F
211 218anti-parallel
Strand 3
F
222 228anti-parallel
Strand 4
F
148 154parallel
Strand 5
F
239 243anti-parallel
Strand 6
F
246 250anti-parallel
Strand 7
F
280 285anti-parallel
Strand 8
F
291 296anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
199 200first strand
Strand 2
F
211 218anti-parallel
Strand 3
F
194 197anti-parallel
Strand 4
F
344 347anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il