Analysis of interatomic Contacts of Structural Units in PDB entry:
3FDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FDD entry

There is 1 chain in PDB entry 3FDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27GLN 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 3FDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 36Right-handed alpha
Helix 2
2
A
45 64Right-handed alpha
Helix 3
3
A
82 94Right-handed alpha
Helix 4
4
A
97 113Right-handed alpha
Helix 5
5
A
117 131Right-handed alpha
Helix 6
6
A
141 156Right-handed alpha
Helix 7
7
A
162 164Right-handed 310
Helix 8
8
A
172 188Right-handed alpha
Helix 9
9
A
205 213Right-handed alpha
Helix 10
10
A
226 230Right-handed 310
Helix 11
11
A
234 239Right-handed alpha
Helix 12
12
A
240 243Right-handed 310
Helix 13
13
A
263 277Right-handed alpha
Helix 14
14
A
289 293Right-handed 310
Helix 15
15
A
298 303Right-handed alpha
Helix 16
16
A
319 323Right-handed 310
Helix 17
17
A
333 341Right-handed alpha
Helix 18
18
A
343 354Right-handed alpha
Helix 19
19
A
360 364Right-handed 310
Helix 20
20
A
365 375Right-handed alpha
Helix 21
21
A
379 383Right-handed 310
Helix 22
22
A
386 403Right-handed alpha
Helix 23
23
A
406 424Right-handed alpha
Helix 24
24
A
446 466Right-handed alpha
Helix 25
25
A
467 480Right-handed alpha
Helix 26
26
A
504 524Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3FDD. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 171first strand
Strand 2
A
325 330anti-parallel
Strand 3
A
307 312anti-parallel
Strand 4
A
282 286parallel
Strand 5
A
246 252parallel
Strand 6
A
196 201parallel
Strand 7
A
219 224parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 445first strand
Strand 2
A
495 499anti-parallel
Strand 3
A
484 485anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il