Analysis of interatomic Contacts of Structural Units in PDB entry:
3FDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FDH entry

There is 1 chain in PDB entry 3FDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 39ARG 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3FDH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 56Right-handed alpha
Helix 2
2
A
60 70Right-handed alpha
Helix 3
3
A
77 85Right-handed alpha
Helix 4
4
A
88 92Right-handed 310
Helix 5
5
A
96 117Right-handed alpha
Helix 6
6
A
126 149Right-handed alpha
Helix 7
7
A
174 193Right-handed alpha
Helix 8
8
A
211 230Right-handed alpha
Helix 9
9
A
231 234Right-handed 310
Helix 10
10
A
236 250Right-handed alpha
Helix 11
11
A
254 258Right-handed 310
Helix 12
12
A
270 280Right-handed alpha
Helix 13
13
A
285 296Right-handed alpha
Helix 14
14
A
297 302Right-handed 310
Helix 15
15
A
320 324Right-handed 310
Helix 16
16
A
343 346Right-handed 310
Helix 17
17
A
355 370Right-handed alpha
Helix 18
18
A
374 401Right-handed alpha
Helix 19
19
A
413 424Right-handed alpha
Helix 20
20
A
424 432Right-handed alpha
Helix 21
21
A
432 445Right-handed alpha
Helix 22
22
A
451 465Right-handed alpha
Helix 23
23
A
476 481Right-handed alpha
Helix 24
24
A
488 495Right-handed alpha
Helix 25
25
A
495 503Right-handed alpha
Helix 26
26
A
505 510Right-handed 310
Helix 27
27
A
513 517Right-handed 310
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There are 5 sheets in PDB entry 3FDH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
282 284anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
172 173anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
351 354anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 305first strand
Strand 2
A
340 341anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
404 405parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il