Analysis of interatomic Contacts of Structural Units in PDB entry:
3FDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FDJ entry

There is 1 chain in PDB entry 3FDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LYS 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3FDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 10Right-handed 310
Helix 2
2
A
40 50Right-handed alpha
Helix 3
3
A
61 70Right-handed alpha
Helix 4
4
A
86 100Right-handed alpha
Helix 5
5
A
116 132Right-handed alpha
Helix 6
6
A
135 148Right-handed alpha
Helix 7
7
A
159 165Right-handed alpha
Helix 8
8
A
169 175Right-handed alpha
Helix 9
9
A
176 178Right-handed 310
Helix 10
10
A
201 217Right-handed alpha
Helix 11
11
A
230 246Right-handed alpha
Helix 12
12
A
256 264Right-handed alpha
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There are 3 sheets in PDB entry 3FDJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
2 6parallel
Strand 3
A
74 79parallel
Strand 4
A
106 111parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
25 27anti-parallel
Strand 3
A
56 58anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 200first strand
Strand 2
A
181 187anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
268 273anti-parallel
Strand 5
A
223 227anti-parallel
Strand 6
A
250 254parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il