Analysis of interatomic Contacts of Structural Units in PDB entry:
3FDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FDM entry

There are 18 chains in PDB entry 3FDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -4ASN 198
B
 GLY -4ASN 197
C
 SER 2ASN 198
D
 ALA 2ALA 2
D
 ARG 4ARG 4
D
 LEU 6LEU 6
D
 LYS 8LYS 8
D
 GLY 10ARG 15
E
 ALA 2ALA 2
E
 ARG 4ARG 4
E
 LEU 6LEU 6
E
 LYS 8LYS 8
E
 GLY 10ARG 15
F
 ALA 2ALA 2
F
 ARG 4ARG 4
F
 LEU 6LEU 6
F
 LYS 8LYS 8
F
 GLY 10ARG 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 3FDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 19Right-handed alpha
Helix 2
2
A
25 102Right-handed alpha
Helix 3
3
A
103 105Right-handed 310
Helix 4
4
A
107 112Right-handed alpha
Helix 5
5
A
115 133Right-handed alpha
Helix 6
6
A
136 157Right-handed alpha
Helix 7
7
A
161 178Right-handed alpha
Helix 8
8
A
178 185Right-handed alpha
Helix 9
9
A
186 196Right-handed alpha
Helix 10
10
B
0 19Right-handed alpha
Helix 11
11
B
25 101Right-handed alpha
Helix 12
12
B
101 112Right-handed alpha
Helix 13
13
B
118 132Right-handed alpha
Helix 14
14
B
136 157Right-handed alpha
Helix 15
15
B
161 177Right-handed alpha
Helix 16
16
B
177 185Right-handed alpha
Helix 17
17
B
187 196Right-handed alpha
Helix 18
18
C
2 20Right-handed alpha
Helix 19
19
C
83 101Right-handed alpha
Helix 20
20
C
101 112Right-handed alpha
Helix 21
21
C
118 131Right-handed alpha
Helix 22
22
C
136 157Right-handed alpha
Helix 23
23
C
161 178Right-handed alpha
Helix 24
24
C
178 185Right-handed alpha
Helix 25
25
C
186 196Right-handed alpha
Helix 26
26
D
1 13Right-handed alpha
Helix 27
27
E
1 14Right-handed alpha
Helix 28
28
F
1 14Right-handed alpha
Back to top of page
There are no sheets in PDB entry 3FDM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il