Analysis of interatomic Contacts of Structural Units in PDB entry:
3FDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FDU entry

There are 6 chains in PDB entry 3FDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8MET 255
B
 LEU 9GLU 249
C
 LEU 9MET 247
D
 LEU 9VAL 242
E
 HIS 12ALA 250
F
 HIS 12ARG 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 82 helices in PDB entry 3FDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 32Right-handed 310
Helix 2
2
A
36 53Right-handed alpha
Helix 3
3
A
73 83Right-handed alpha
Helix 4
4
A
88 91Right-handed 310
Helix 5
5
A
92 104Right-handed alpha
Helix 6
6
A
118 123Right-handed alpha
Helix 7
7
A
124 127Right-handed 310
Helix 8
8
A
152 162Right-handed alpha
Helix 9
9
A
162 173Right-handed alpha
Helix 10
10
A
177 184Right-handed alpha
Helix 11
11
A
193 207Right-handed alpha
Helix 12
12
A
209 221Right-handed alpha
Helix 13
13
A
223 243Right-handed alpha
Helix 14
14
A
244 255Right-handed alpha
Helix 15
15
B
28 32Right-handed 310
Helix 16
16
B
36 53Right-handed alpha
Helix 17
17
B
73 78Right-handed alpha
Helix 18
18
B
88 91Right-handed 310
Helix 19
19
B
92 104Right-handed alpha
Helix 20
20
B
118 123Right-handed alpha
Helix 21
21
B
124 126Right-handed 310
Helix 22
22
B
141 146Right-handed 310
Helix 23
23
B
152 162Right-handed alpha
Helix 24
24
B
162 173Right-handed alpha
Helix 25
25
B
177 184Right-handed alpha
Helix 26
26
B
193 207Right-handed alpha
Helix 27
27
B
209 221Right-handed alpha
Helix 28
28
B
223 243Right-handed alpha
Helix 29
29
B
244 249Right-handed alpha
Helix 30
30
C
28 32Right-handed 310
Helix 31
31
C
36 53Right-handed alpha
Helix 32
32
C
88 91Right-handed 310
Helix 33
33
C
92 104Right-handed alpha
Helix 34
34
C
118 123Right-handed alpha
Helix 35
35
C
124 127Right-handed 310
Helix 36
36
C
141 146Right-handed 310
Helix 37
37
C
152 162Right-handed alpha
Helix 38
38
C
162 173Right-handed alpha
Helix 39
39
C
177 184Right-handed alpha
Helix 40
40
C
193 207Right-handed alpha
Helix 41
41
C
209 221Right-handed alpha
Helix 42
42
C
223 242Right-handed alpha
Helix 43
43
D
28 32Right-handed 310
Helix 44
44
D
36 53Right-handed alpha
Helix 45
45
D
88 91Right-handed 310
Helix 46
46
D
92 104Right-handed alpha
Helix 47
47
D
118 123Right-handed alpha
Helix 48
48
D
124 126Right-handed 310
Helix 49
49
D
141 146Right-handed 310
Helix 50
50
D
152 162Right-handed alpha
Helix 51
51
D
162 173Right-handed alpha
Helix 52
52
D
177 184Right-handed alpha
Helix 53
53
D
193 208Right-handed alpha
Helix 54
54
D
209 221Right-handed alpha
Helix 55
55
D
223 242Right-handed alpha
Helix 56
56
E
28 32Right-handed 310
Helix 57
57
E
36 52Right-handed alpha
Helix 58
58
E
73 82Right-handed alpha
Helix 59
59
E
88 91Right-handed 310
Helix 60
60
E
92 104Right-handed alpha
Helix 61
61
E
118 123Right-handed alpha
Helix 62
62
E
124 127Right-handed 310
Helix 63
63
E
142 146Right-handed 310
Helix 64
64
E
152 162Right-handed alpha
Helix 65
65
E
162 173Right-handed alpha
Helix 66
66
E
178 184Right-handed alpha
Helix 67
67
E
193 207Right-handed alpha
Helix 68
68
E
209 221Right-handed alpha
Helix 69
69
E
223 242Right-handed alpha
Helix 70
70
E
244 250Right-handed alpha
Helix 71
71
F
28 32Right-handed 310
Helix 72
72
F
36 53Right-handed alpha
Helix 73
73
F
92 104Right-handed alpha
Helix 74
74
F
118 123Right-handed alpha
Helix 75
75
F
124 127Right-handed 310
Helix 76
76
F
141 146Right-handed 310
Helix 77
77
F
152 162Right-handed alpha
Helix 78
78
F
162 173Right-handed alpha
Helix 79
79
F
178 184Right-handed alpha
Helix 80
80
F
193 207Right-handed alpha
Helix 81
81
F
209 221Right-handed alpha
Helix 82
82
F
223 241Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 3FDU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 18first strand
Strand 2
A
21 26anti-parallel
Strand 3
A
58 63parallel
Strand 4
A
108 112parallel
Strand 5
A
129 132parallel
Strand 6
A
189 190parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 117first strand
Strand 2
A
137 139parallel
Strand 3
A
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 18first strand
Strand 2
B
21 26anti-parallel
Strand 3
B
58 63parallel
Strand 4
B
108 112parallel
Strand 5
B
129 132parallel
Strand 6
B
189 190parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
137 139parallel
Strand 3
B
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 18first strand
Strand 2
C
21 26anti-parallel
Strand 3
C
58 62parallel
Strand 4
C
108 112parallel
Strand 5
C
129 132parallel
Strand 6
C
189 190parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 117first strand
Strand 2
C
137 139parallel
Strand 3
C
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 18first strand
Strand 2
D
21 26anti-parallel
Strand 3
D
58 63parallel
Strand 4
D
108 112parallel
Strand 5
D
129 132parallel
Strand 6
D
189 190parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
115 117first strand
Strand 2
D
137 139parallel
Strand 3
D
175 176anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
13 18first strand
Strand 2
E
21 26anti-parallel
Strand 3
E
58 63parallel
Strand 4
E
108 112parallel
Strand 5
E
129 132parallel
Strand 6
E
189 190parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
115 117first strand
Strand 2
E
137 139parallel
Strand 3
E
176 177anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
13 18first strand
Strand 2
F
21 26anti-parallel
Strand 3
F
58 63parallel
Strand 4
F
108 112parallel
Strand 5
F
129 132parallel
Strand 6
F
189 190parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
115 117first strand
Strand 2
F
137 139parallel
Strand 3
F
175 177anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il