Analysis of interatomic Contacts of Structural Units in PDB entry:
3FDW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FDW entry

There are 2 chains in PDB entry 3FDW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 354LYS 483
B
 ILE 354LYS 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3FDW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
406 408Right-handed 310
Helix 2
2
A
436 439Right-handed 310
Helix 3
3
A
451 453Right-handed 310
Helix 4
4
A
465 469Right-handed alpha
Helix 5
5
B
406 408Right-handed 310
Helix 6
6
B
433 438Right-handed alpha
Helix 7
7
B
451 453Right-handed 310
Helix 8
8
B
465 469Right-handed alpha
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There are 4 sheets in PDB entry 3FDW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 431first strand
Strand 2
A
372 381anti-parallel
Strand 3
A
359 367anti-parallel
Strand 4
A
475 479anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 412first strand
Strand 2
A
395 402anti-parallel
Strand 3
A
441 449anti-parallel
Strand 4
A
455 464anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 431first strand
Strand 2
B
372 381anti-parallel
Strand 3
B
359 367anti-parallel
Strand 4
B
475 479anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 412first strand
Strand 2
B
395 402anti-parallel
Strand 3
B
441 449anti-parallel
Strand 4
B
455 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il