Analysis of interatomic Contacts of Structural Units in PDB entry:
3FEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FEE entry

There is 1 chain in PDB entry 3FEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 46VAL 739
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3FEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 55Right-handed alpha
Helix 2
2
A
56 68Right-handed alpha
Helix 3
3
A
76 94Right-handed alpha
Helix 4
4
A
171 181Right-handed alpha
Helix 5
5
A
199 210Right-handed alpha
Helix 6
6
A
220 225Right-handed alpha
Helix 7
7
A
272 276Right-handed 310
Helix 8
8
A
288 297Right-handed alpha
Helix 9
9
A
306 310Right-handed 310
Helix 10
10
A
378 398Right-handed alpha
Helix 11
11
A
413 417Right-handed 310
Helix 12
12
A
418 435Right-handed alpha
Helix 13
13
A
460 469Right-handed alpha
Helix 14
14
A
482 491Right-handed alpha
Helix 15
15
A
510 517Right-handed alpha
Helix 16
16
A
548 556Right-handed alpha
Helix 17
17
A
560 580Right-handed alpha
Helix 18
18
A
586 606Right-handed alpha
Helix 19
19
A
608 616Right-handed alpha
Helix 20
20
A
619 641Right-handed alpha
Helix 21
21
A
647 665Right-handed alpha
Helix 22
22
A
695 703Right-handed alpha
Helix 23
23
A
704 708Right-handed 310
Helix 24
24
A
710 737Right-handed alpha
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There are 5 sheets in PDB entry 3FEE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 109first strand
Strand 2
A
339 352anti-parallel
Strand 3
A
404 411anti-parallel
Strand 4
A
357 367parallel
Strand 5
A
436 441parallel
Strand 6
A
521 528parallel
Strand 7
A
451 456anti-parallel
Strand 8
A
502 503parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
117 121anti-parallel
Strand 3
A
331 335anti-parallel
Strand 4
A
161 162anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
190 194parallel
Strand 3
A
214 218parallel
Strand 4
A
284 287parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 493first strand
Strand 2
A
496 500anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 685first strand
Strand 2
A
688 694anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il