Analysis of interatomic Contacts of Structural Units in PDB entry:
3FFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FFV entry

There are 2 chains in PDB entry 3FFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 181
B
 MET 1001LEU 1181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3FFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 25Right-handed alpha
Helix 2
2
A
62 69Right-handed alpha
Helix 3
3
A
74 81Right-handed alpha
Helix 4
4
A
105 126Right-handed alpha
Helix 5
5
A
169 177Right-handed alpha
Helix 6
6
B
1003 1025Right-handed alpha
Helix 7
7
B
1062 1070Right-handed alpha
Helix 8
8
B
1074 1083Right-handed alpha
Helix 9
9
B
1105 1126Right-handed alpha
Helix 10
10
B
1169 1177Right-handed alpha
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There are 6 sheets in PDB entry 3FFV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
49 51anti-parallel
Strand 3
A
41 44anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
84 85anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 167first strand
Strand 2
A
153 157anti-parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
131 136anti-parallel
Strand 5
A
96 100anti-parallel
Strand 6
A
89 93anti-parallel
Strand 7
A
178 179anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1029 1030first strand
Strand 2
B
1049 1051anti-parallel
Strand 3
B
1041 1044anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1054 1055first strand
Strand 2
B
1084 1085anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1163 1167first strand
Strand 2
B
1153 1157anti-parallel
Strand 3
B
1142 1147anti-parallel
Strand 4
B
1131 1137anti-parallel
Strand 5
B
1096 1100anti-parallel
Strand 6
B
1089 1093anti-parallel
Strand 7
B
1178 1179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il