Analysis of interatomic Contacts of Structural Units in PDB entry:
3FI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FI8 entry

There is 1 chain in PDB entry 3FI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 79LYS 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3FI8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
82 95Right-handed alpha
Helix 2
2
A
97 101Right-handed 310
Helix 3
3
A
126 132Right-handed alpha
Helix 4
4
A
156 167Right-handed alpha
Helix 5
5
A
194 197Right-handed 310
Helix 6
6
A
198 213Right-handed alpha
Helix 7
7
A
214 219Right-handed alpha
Helix 8
8
A
229 244Right-handed alpha
Helix 9
9
A
247 251Right-handed 310
Helix 10
10
A
254 273Right-handed alpha
Helix 11
11
A
277 280Right-handed 310
Helix 12
12
A
290 292Right-handed 310
Helix 13
13
A
314 325Right-handed alpha
Helix 14
14
A
341 344Right-handed 310
Helix 15
15
A
346 362Right-handed alpha
Helix 16
16
A
372 403Right-handed alpha
Helix 17
17
A
410 432Right-handed alpha
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There are 4 sheets in PDB entry 3FI8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 111first strand
Strand 2
A
118 124anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
180 184anti-parallel
Strand 5
A
173 177anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
294 297anti-parallel
Strand 3
A
300 303anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 285first strand
Strand 2
A
310 313anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 328first strand
Strand 2
A
338 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il