Analysis of interatomic Contacts of Structural Units in PDB entry:
3FIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FIJ entry

There are 8 chains in PDB entry 3FIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3MSE 244
B
 LEU 3THR 243
C
 LEU 3LYS 241
D
 LEU 3THR 243
E
 LEU 3MSE 244
F
 LEU 3THR 243
G
 LEU 3LYS 242
H
 LEU 3MSE 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 3FIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 41Right-handed alpha
Helix 2
2
A
51 53Right-handed 310
Helix 3
3
A
54 61Right-handed alpha
Helix 4
4
A
74 79Right-handed 310
Helix 5
5
A
90 107Right-handed alpha
Helix 6
6
A
115 125Right-handed alpha
Helix 7
7
A
132 136Right-handed 310
Helix 8
8
A
163 167Right-handed 310
Helix 9
9
A
218 225Right-handed 310
Helix 10
10
A
226 242Right-handed alpha
Helix 11
11
B
31 40Right-handed alpha
Helix 12
12
B
51 53Right-handed 310
Helix 13
13
B
54 61Right-handed alpha
Helix 14
14
B
74 79Right-handed 310
Helix 15
15
B
90 107Right-handed alpha
Helix 16
16
B
115 125Right-handed alpha
Helix 17
17
B
132 136Right-handed 310
Helix 18
18
B
163 168Right-handed alpha
Helix 19
19
B
226 242Right-handed alpha
Helix 20
20
C
30 40Right-handed alpha
Helix 21
21
C
51 53Right-handed 310
Helix 22
22
C
54 60Right-handed alpha
Helix 23
23
C
74 79Right-handed 310
Helix 24
24
C
90 108Right-handed alpha
Helix 25
25
C
115 125Right-handed alpha
Helix 26
26
C
132 136Right-handed 310
Helix 27
27
C
163 167Right-handed 310
Helix 28
28
C
218 225Right-handed 310
Helix 29
29
C
226 241Right-handed alpha
Helix 30
30
D
30 40Right-handed alpha
Helix 31
31
D
51 53Right-handed 310
Helix 32
32
D
54 61Right-handed alpha
Helix 33
33
D
74 79Right-handed 310
Helix 34
34
D
90 108Right-handed alpha
Helix 35
35
D
115 125Right-handed alpha
Helix 36
36
D
132 136Right-handed 310
Helix 37
37
D
163 167Right-handed 310
Helix 38
38
D
218 222Right-handed 310
Helix 39
39
D
226 242Right-handed alpha
Helix 40
40
E
30 40Right-handed alpha
Helix 41
41
E
51 53Right-handed 310
Helix 42
42
E
54 60Right-handed alpha
Helix 43
43
E
74 79Right-handed 310
Helix 44
44
E
90 107Right-handed alpha
Helix 45
45
E
115 125Right-handed alpha
Helix 46
46
E
132 136Right-handed 310
Helix 47
47
E
163 167Right-handed 310
Helix 48
48
E
226 243Right-handed alpha
Helix 49
49
F
30 40Right-handed alpha
Helix 50
50
F
51 53Right-handed 310
Helix 51
51
F
54 61Right-handed alpha
Helix 52
52
F
74 79Right-handed 310
Helix 53
53
F
90 107Right-handed alpha
Helix 54
54
F
115 125Right-handed alpha
Helix 55
55
F
132 136Right-handed 310
Helix 56
56
F
163 167Right-handed 310
Helix 57
57
F
218 225Right-handed 310
Helix 58
58
F
226 242Right-handed alpha
Helix 59
59
G
31 40Right-handed alpha
Helix 60
60
G
51 53Right-handed 310
Helix 61
61
G
54 60Right-handed alpha
Helix 62
62
G
74 79Right-handed 310
Helix 63
63
G
90 107Right-handed alpha
Helix 64
64
G
115 125Right-handed alpha
Helix 65
65
G
132 136Right-handed 310
Helix 66
66
G
163 167Right-handed 310
Helix 67
67
G
218 222Right-handed 310
Helix 68
68
G
226 242Right-handed alpha
Helix 69
69
H
30 40Right-handed alpha
Helix 70
70
H
51 53Right-handed 310
Helix 71
71
H
54 61Right-handed alpha
Helix 72
72
H
74 79Right-handed 310
Helix 73
73
H
90 107Right-handed alpha
Helix 74
74
H
115 125Right-handed alpha
Helix 75
75
H
132 136Right-handed 310
Helix 76
76
H
162 168Right-handed alpha
Helix 77
77
H
218 222Right-handed 310
Helix 78
78
H
226 241Right-handed alpha
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There are 16 sheets in PDB entry 3FIJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
6 10parallel
Strand 3
A
64 67parallel
Strand 4
A
111 114parallel
Strand 5
A
212 215parallel
Strand 6
A
200 205anti-parallel
Strand 7
A
189 195anti-parallel
Strand 8
A
154 158anti-parallel
Strand 9
A
172 174anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
181 182anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
6 10parallel
Strand 3
B
64 67parallel
Strand 4
B
111 114parallel
Strand 5
B
212 215parallel
Strand 6
B
200 205anti-parallel
Strand 7
B
189 195anti-parallel
Strand 8
B
154 158anti-parallel
Strand 9
B
173 174anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 130first strand
Strand 2
B
181 182anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 47first strand
Strand 2
C
6 10parallel
Strand 3
C
64 67parallel
Strand 4
C
111 114parallel
Strand 5
C
212 215parallel
Strand 6
C
200 205anti-parallel
Strand 7
C
189 195anti-parallel
Strand 8
C
154 158anti-parallel
Strand 9
C
172 174anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 130first strand
Strand 2
C
181 182anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 47first strand
Strand 2
D
6 10parallel
Strand 3
D
64 67parallel
Strand 4
D
111 114parallel
Strand 5
D
212 215parallel
Strand 6
D
200 205anti-parallel
Strand 7
D
189 195anti-parallel
Strand 8
D
154 158anti-parallel
Strand 9
D
172 174anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
129 130first strand
Strand 2
D
181 182anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 47first strand
Strand 2
E
6 10parallel
Strand 3
E
64 67parallel
Strand 4
E
111 114parallel
Strand 5
E
212 215parallel
Strand 6
E
200 205anti-parallel
Strand 7
E
189 195anti-parallel
Strand 8
E
154 158anti-parallel
Strand 9
E
173 174anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
129 130first strand
Strand 2
E
181 182anti-parallel
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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
43 47first strand
Strand 2
F
6 10parallel
Strand 3
F
64 67parallel
Strand 4
F
111 114parallel
Strand 5
F
212 215parallel
Strand 6
F
200 205anti-parallel
Strand 7
F
189 195anti-parallel
Strand 8
F
154 158anti-parallel
Strand 9
F
172 174anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
129 130first strand
Strand 2
F
181 182anti-parallel
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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
43 47first strand
Strand 2
G
6 10parallel
Strand 3
G
64 67parallel
Strand 4
G
111 114parallel
Strand 5
G
212 215parallel
Strand 6
G
200 205anti-parallel
Strand 7
G
189 195anti-parallel
Strand 8
G
154 158anti-parallel
Strand 9
G
173 174anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
129 130first strand
Strand 2
G
181 182anti-parallel
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There are 9 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
43 47first strand
Strand 2
H
6 10parallel
Strand 3
H
64 67parallel
Strand 4
H
111 114parallel
Strand 5
H
212 215parallel
Strand 6
H
200 205anti-parallel
Strand 7
H
189 195anti-parallel
Strand 8
H
154 158anti-parallel
Strand 9
H
172 174anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
129 130first strand
Strand 2
H
181 182anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il