Analysis of interatomic Contacts of Structural Units in PDB entry:
3FIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FIM entry

There is 1 chain in PDB entry 3FIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 2GLN 566
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3FIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
13 22Right-handed alpha
Helix 2
2
B
41 45Right-handed 310
Helix 3
3
B
46 54Right-handed 310
Helix 4
4
B
68 72Right-handed 310
Helix 5
5
B
85 90Right-handed 310
Helix 6
6
B
99 111Right-handed alpha
Helix 7
7
B
116 127Right-handed alpha
Helix 8
8
B
144 148Right-handed 310
Helix 9
9
B
164 176Right-handed alpha
Helix 10
10
B
176 181Right-handed alpha
Helix 11
11
B
185 189Right-handed 310
Helix 12
12
B
208 213Right-handed alpha
Helix 13
13
B
213 218Right-handed alpha
Helix 14
14
B
272 284Right-handed alpha
Helix 15
15
B
288 295Right-handed alpha
Helix 16
16
B
328 333Right-handed 310
Helix 17
17
B
334 349Right-handed alpha
Helix 18
18
B
351 355Right-handed 310
Helix 19
19
B
370 375Right-handed 310
Helix 20
20
B
445 464Right-handed alpha
Helix 21
21
B
465 469Right-handed 310
Helix 22
22
B
477 481Right-handed 310
Helix 23
23
B
485 497Right-handed alpha
Helix 24
24
B
535 539Right-handed 310
Helix 25
25
B
547 565Right-handed alpha
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There are 9 sheets in PDB entry 3FIM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
29 32parallel
Strand 3
B
3 7parallel
Strand 4
B
260 270parallel
Strand 5
B
248 252anti-parallel
Strand 6
B
230 235anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
29 32parallel
Strand 3
B
3 7parallel
Strand 4
B
260 270parallel
Strand 5
B
531 533parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
154 156parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 196first strand
Strand 2
B
360 364anti-parallel
Strand 3
B
388 393anti-parallel
Strand 4
B
409 416anti-parallel
Strand 5
B
319 322anti-parallel
Strand 6
B
472 475anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 196first strand
Strand 2
B
360 364anti-parallel
Strand 3
B
388 393anti-parallel
Strand 4
B
409 416anti-parallel
Strand 5
B
314 316anti-parallel
Strand 6
B
498 499anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
205 206anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
243 245anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 287first strand
Strand 2
B
301 302parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 426first strand
Strand 2
B
437 439anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il