Analysis of interatomic Contacts of Structural Units in PDB entry:
3FIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FIP entry

There are 2 chains in PDB entry 3FIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 146THR 636
B
 LEU 146ILE 635
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 3FIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
450 459Right-handed alpha
Helix 2
2
B
450 457Right-handed alpha
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There are 10 sheets in PDB entry 3FIP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 27 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 158first strand
Strand 2
A
623 634anti-parallel
Strand 3
A
609 618anti-parallel
Strand 4
A
595 605anti-parallel
Strand 5
A
579 588anti-parallel
Strand 6
A
563 572anti-parallel
Strand 7
A
552 557anti-parallel
Strand 8
A
538 545anti-parallel
Strand 9
A
521 527anti-parallel
Strand 10
A
501 510anti-parallel
Strand 11
A
485 495anti-parallel
Strand 12
A
467 478anti-parallel
Strand 13
A
437 444anti-parallel
Strand 14
A
415 425anti-parallel
Strand 15
A
398 409anti-parallel
Strand 16
A
382 392anti-parallel
Strand 17
A
370 379anti-parallel
Strand 18
A
356 365anti-parallel
Strand 19
A
336 344anti-parallel
Strand 20
A
240 248anti-parallel
Strand 21
A
222 230anti-parallel
Strand 22
A
207 217anti-parallel
Strand 23
A
201 204first strand
Strand 24
A
191 194anti-parallel
Strand 25
A
181 188first strand
Strand 26
A
165 176anti-parallel
Strand 27
A
147 158anti-parallel
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There are 18 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 176first strand
Strand 2
A
191 194anti-parallel
Strand 3
A
201 204anti-parallel
Strand 4
B
202 216anti-parallel
Strand 5
B
222 231anti-parallel
Strand 6
B
239 248anti-parallel
Strand 7
B
336 344anti-parallel
Strand 8
B
356 365anti-parallel
Strand 9
B
370 373anti-parallel
Strand 10
B
382 391anti-parallel
Strand 11
B
399 409anti-parallel
Strand 12
B
415 422anti-parallel
Strand 13
B
439 444anti-parallel
Strand 14
B
467 473anti-parallel
Strand 15
B
489 495anti-parallel
Strand 16
B
501 508anti-parallel
Strand 17
B
523 528anti-parallel
Strand 18
B
537 542anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 365first strand
Strand 2
B
376 379anti-parallel
Strand 3
B
382 391anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 216first strand
Strand 2
B
202 216first strand
Strand 3
B
176 177first strand
Strand 4
B
181 193anti-parallel
Strand 5
B
172 173anti-parallel
Strand 6
B
148 154anti-parallel
Strand 7
B
168 169anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 154first strand
Strand 2
B
626 633anti-parallel
Strand 3
B
609 616anti-parallel
Strand 4
B
599 603anti-parallel
Strand 5
B
580 583anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 268first strand
Strand 2
A
291 293anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 287first strand
Strand 2
A
273 278anti-parallel
Strand 3
A
305 311anti-parallel
Strand 4
A
320 323anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 265first strand
Strand 2
B
294 295anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 282first strand
Strand 2
B
273 278anti-parallel
Strand 3
B
305 311anti-parallel
Strand 4
B
319 323anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
555 557first strand
Strand 2
B
564 566anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il