Analysis of interatomic Contacts of Structural Units in PDB entry:
3FJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3FJ1 entry

There are 4 chains in PDB entry 3FJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	ASP 331
B	HIS 4	ASP 331
C	ILE 5	ASP 331
D	MSE 1	ALA 332

There are 62 helices in PDB entry 3FJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	6	41	Right-handed alpha
Helix 2	2	A	51	69	Right-handed alpha
Helix 3	3	A	77	82	Right-handed alpha
Helix 4	4	A	103	116	Right-handed alpha
Helix 5	5	A	129	134	Right-handed alpha
Helix 6	6	A	151	171	Right-handed alpha
Helix 7	7	A	172	181	Right-handed alpha
Helix 8	8	A	181	191	Right-handed alpha
Helix 9	9	A	194	204	Right-handed alpha
Helix 10	10	A	212	214	Right-handed 310
Helix 11	11	A	215	231	Right-handed alpha
Helix 12	12	A	241	245	Right-handed 310
Helix 13	13	A	248	253	Right-handed alpha
Helix 14	14	A	265	279	Right-handed alpha
Helix 15	15	A	306	326	Right-handed alpha
Helix 16	16	B	6	41	Right-handed alpha
Helix 17	17	B	50	69	Right-handed alpha
Helix 18	18	B	77	82	Right-handed alpha
Helix 19	19	B	103	116	Right-handed alpha
Helix 20	20	B	129	134	Right-handed alpha
Helix 21	21	B	151	171	Right-handed alpha
Helix 22	22	B	172	181	Right-handed alpha
Helix 23	23	B	181	190	Right-handed alpha
Helix 24	24	B	194	204	Right-handed alpha
Helix 25	25	B	212	214	Right-handed 310
Helix 26	26	B	215	231	Right-handed alpha
Helix 27	27	B	241	245	Right-handed 310
Helix 28	28	B	248	253	Right-handed alpha
Helix 29	29	B	265	279	Right-handed alpha
Helix 30	30	B	306	326	Right-handed alpha
Helix 31	31	C	6	14	Right-handed alpha
Helix 32	32	C	14	26	Right-handed alpha
Helix 33	33	C	26	41	Right-handed alpha
Helix 34	34	C	50	69	Right-handed alpha
Helix 35	35	C	77	82	Right-handed alpha
Helix 36	36	C	103	116	Right-handed alpha
Helix 37	37	C	129	134	Right-handed alpha
Helix 38	38	C	151	171	Right-handed alpha
Helix 39	39	C	172	181	Right-handed alpha
Helix 40	40	C	181	190	Right-handed alpha
Helix 41	41	C	194	204	Right-handed alpha
Helix 42	42	C	212	214	Right-handed 310
Helix 43	43	C	215	231	Right-handed alpha
Helix 44	44	C	248	253	Right-handed alpha
Helix 45	45	C	265	279	Right-handed alpha
Helix 46	46	C	306	326	Right-handed alpha
Helix 47	47	D	6	14	Right-handed alpha
Helix 48	48	D	14	41	Right-handed alpha
Helix 49	49	D	50	69	Right-handed alpha
Helix 50	50	D	77	82	Right-handed alpha
Helix 51	51	D	103	116	Right-handed alpha
Helix 52	52	D	129	134	Right-handed alpha
Helix 53	53	D	151	171	Right-handed alpha
Helix 54	54	D	172	181	Right-handed alpha
Helix 55	55	D	181	190	Right-handed alpha
Helix 56	56	D	194	204	Right-handed alpha
Helix 57	57	D	214	231	Right-handed alpha
Helix 58	58	D	241	245	Right-handed 310
Helix 59	59	D	248	253	Right-handed alpha
Helix 60	60	D	265	279	Right-handed alpha
Helix 61	61	D	303	305	Right-handed 310
Helix 62	62	D	306	326	Right-handed alpha

There are 8 sheets in PDB entry 3FJ1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	74	first strand
Strand 2	A	44	48	parallel
Strand 3	A	92	98	parallel
Strand 4	A	119	124	parallel
Strand 5	A	137	140	parallel

Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	238	first strand
Strand 2	A	207	211	parallel
Strand 3	A	256	258	parallel
Strand 4	A	283	285	parallel
Strand 5	A	294	295	parallel

Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	74	first strand
Strand 2	B	45	48	parallel
Strand 3	B	93	98	parallel
Strand 4	B	119	124	parallel
Strand 5	B	137	140	parallel

Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	B	207	211	parallel
Strand 3	B	256	258	parallel
Strand 4	B	283	285	parallel
Strand 5	B	294	295	parallel

Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	44	48	parallel
Strand 3	C	92	98	parallel
Strand 4	C	119	124	parallel
Strand 5	C	137	140	parallel

Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	238	first strand
Strand 2	C	207	211	parallel
Strand 3	C	256	258	parallel
Strand 4	C	283	285	parallel
Strand 5	C	294	295	parallel

Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	74	first strand
Strand 2	D	44	48	parallel
Strand 3	D	92	97	parallel
Strand 4	D	119	124	parallel
Strand 5	D	137	140	parallel

Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	238	first strand
Strand 2	D	207	211	parallel
Strand 3	D	256	258	parallel
Strand 4	D	283	285	parallel
Strand 5	D	294	295	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3FJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
3FJ1