Analysis of interatomic Contacts of Structural Units in PDB entry:
3FJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FJM entry

There are 2 chains in PDB entry 3FJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 21HIS 251
B
 ASP 21HIS 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3FJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 46Right-handed alpha
Helix 2
2
A
55 67Right-handed alpha
Helix 3
3
A
74 84Right-handed alpha
Helix 4
4
A
85 89Right-handed 310
Helix 5
5
A
90 94Right-handed 310
Helix 6
6
A
116 123Right-handed alpha
Helix 7
7
A
142 149Right-handed alpha
Helix 8
8
A
150 152Right-handed 310
Helix 9
9
A
153 163Right-handed alpha
Helix 10
10
A
170 180Right-handed alpha
Helix 11
11
A
190 196Right-handed alpha
Helix 12
12
A
224 234Right-handed alpha
Helix 13
13
A
236 246Right-handed alpha
Helix 14
14
B
30 46Right-handed alpha
Helix 15
15
B
55 67Right-handed alpha
Helix 16
16
B
74 84Right-handed alpha
Helix 17
17
B
85 89Right-handed 310
Helix 18
18
B
90 94Right-handed 310
Helix 19
19
B
116 123Right-handed alpha
Helix 20
20
B
142 149Right-handed alpha
Helix 21
21
B
150 152Right-handed 310
Helix 22
22
B
153 163Right-handed alpha
Helix 23
23
B
170 180Right-handed alpha
Helix 24
24
B
190 196Right-handed alpha
Helix 25
25
B
224 234Right-handed alpha
Helix 26
26
B
236 246Right-handed alpha
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There are 4 sheets in PDB entry 3FJM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
22 26parallel
Strand 3
A
69 72parallel
Strand 4
A
212 219anti-parallel
Strand 5
A
95 106anti-parallel
Strand 6
A
185 189anti-parallel
Strand 7
A
127 130parallel
Strand 8
A
164 168parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
22 26parallel
Strand 3
A
69 72parallel
Strand 4
A
212 219anti-parallel
Strand 5
A
95 106anti-parallel
Strand 6
A
201 204anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
22 26parallel
Strand 3
B
69 72parallel
Strand 4
B
212 219anti-parallel
Strand 5
B
95 106anti-parallel
Strand 6
B
185 189anti-parallel
Strand 7
B
127 130parallel
Strand 8
B
164 168parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 53first strand
Strand 2
B
22 26parallel
Strand 3
B
69 72parallel
Strand 4
B
212 219anti-parallel
Strand 5
B
95 106anti-parallel
Strand 6
B
201 204anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il