Analysis of interatomic Contacts of Structural Units in PDB entry:
3FJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FJV entry

There are 2 chains in PDB entry 3FJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASP 193
B
 LEU 3ASP 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3FJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 8Right-handed 310
Helix 2
2
A
10 30Right-handed alpha
Helix 3
3
A
46 62Right-handed alpha
Helix 4
4
A
65 77Right-handed alpha
Helix 5
5
A
78 80Right-handed 310
Helix 6
6
A
96 107Right-handed alpha
Helix 7
7
A
109 112Right-handed 310
Helix 8
8
A
133 139Right-handed alpha
Helix 9
9
A
151 160Right-handed alpha
Helix 10
10
A
181 190Right-handed alpha
Helix 11
11
B
4 8Right-handed 310
Helix 12
12
B
10 30Right-handed alpha
Helix 13
13
B
46 62Right-handed alpha
Helix 14
14
B
65 77Right-handed alpha
Helix 15
15
B
78 80Right-handed 310
Helix 16
16
B
96 104Right-handed alpha
Helix 17
17
B
105 108Right-handed 310
Helix 18
18
B
109 112Right-handed 310
Helix 19
19
B
151 160Right-handed alpha
Helix 20
20
B
181 190Right-handed alpha
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There are 4 sheets in PDB entry 3FJV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
40 44anti-parallel
Strand 3
A
85 92anti-parallel
Strand 4
A
143 149anti-parallel
Strand 5
A
127 128anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
114 118anti-parallel
Strand 3
A
164 168anti-parallel
Strand 4
A
175 179anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
40 44anti-parallel
Strand 3
B
85 92anti-parallel
Strand 4
B
146 149anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 125first strand
Strand 2
B
114 118anti-parallel
Strand 3
B
164 170anti-parallel
Strand 4
B
173 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il