Analysis of interatomic Contacts of Structural Units in PDB entry:
3FJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FJY entry

There are 2 chains in PDB entry 3FJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9ILE 360
B
 LEU 9ILE 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3FJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 28Right-handed alpha
Helix 2
2
A
29 35Right-handed 310
Helix 3
3
A
36 42Right-handed alpha
Helix 4
4
A
69 83Right-handed alpha
Helix 5
5
A
128 134Right-handed alpha
Helix 6
6
A
135 140Right-handed alpha
Helix 7
7
A
158 165Right-handed alpha
Helix 8
8
A
167 183Right-handed alpha
Helix 9
9
A
184 188Right-handed 310
Helix 10
10
A
215 230Right-handed alpha
Helix 11
11
A
242 257Right-handed alpha
Helix 12
12
A
264 266Right-handed 310
Helix 13
13
A
267 274Right-handed alpha
Helix 14
14
A
274 293Right-handed alpha
Helix 15
15
A
301 313Right-handed alpha
Helix 16
16
A
314 316Right-handed 310
Helix 17
17
A
318 325Right-handed alpha
Helix 18
18
B
23 28Right-handed alpha
Helix 19
19
B
29 35Right-handed 310
Helix 20
20
B
36 43Right-handed alpha
Helix 21
21
B
69 83Right-handed alpha
Helix 22
22
B
128 135Right-handed alpha
Helix 23
23
B
135 140Right-handed alpha
Helix 24
24
B
158 165Right-handed alpha
Helix 25
25
B
167 182Right-handed alpha
Helix 26
26
B
183 188Right-handed 310
Helix 27
27
B
215 230Right-handed alpha
Helix 28
28
B
242 257Right-handed alpha
Helix 29
29
B
264 266Right-handed 310
Helix 30
30
B
267 274Right-handed alpha
Helix 31
31
B
274 293Right-handed alpha
Helix 32
32
B
301 313Right-handed alpha
Helix 33
33
B
314 316Right-handed 310
Helix 34
34
B
318 323Right-handed alpha
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There are 6 sheets in PDB entry 3FJY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
44 51anti-parallel
Strand 3
A
11 19anti-parallel
Strand 4
A
119 126parallel
Strand 5
A
86 95anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
11 19anti-parallel
Strand 3
A
44 51anti-parallel
Strand 4
A
152 157anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 262first strand
Strand 2
A
234 239parallel
Strand 3
A
295 300parallel
Strand 4
A
189 195parallel
Strand 5
A
337 345anti-parallel
Strand 6
A
348 357anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
44 51anti-parallel
Strand 3
B
10 19anti-parallel
Strand 4
B
116 126parallel
Strand 5
B
86 98anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
10 19anti-parallel
Strand 3
B
44 51anti-parallel
Strand 4
B
152 157anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 262first strand
Strand 2
B
234 239parallel
Strand 3
B
295 300parallel
Strand 4
B
189 195parallel
Strand 5
B
337 345anti-parallel
Strand 6
B
348 357anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il