Analysis of interatomic Contacts of Structural Units in PDB entry:
3FM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FM7 entry

There are 6 chains in PDB entry 3FM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 9VAL 111
B
 SER 8VAL 111
C
 ASN 109THR 135
D
 ASN 109THR 135
E
 LYS 5GLY 89
F
 LYS 5GLY 89
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3FM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 21Right-handed alpha
Helix 2
2
A
33 35Right-handed 310
Helix 3
3
A
36 54Right-handed alpha
Helix 4
4
B
12 27Right-handed alpha
Helix 5
5
B
33 49Right-handed alpha
Helix 6
6
E
15 32Right-handed alpha
Helix 7
7
E
34 51Right-handed alpha
Helix 8
8
F
15 32Right-handed alpha
Helix 9
9
F
34 50Right-handed alpha
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There are 6 sheets in PDB entry 3FM7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 96first strand
Strand 2
A
100 109anti-parallel
Strand 3
A
60 69anti-parallel
Strand 4
B
79 81anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 96first strand
Strand 2
A
100 109anti-parallel
Strand 3
A
60 69anti-parallel
Strand 4
B
75 76anti-parallel
Strand 5
D
119 120anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 94first strand
Strand 2
B
100 110anti-parallel
Strand 3
B
59 69anti-parallel
Strand 4
A
79 84anti-parallel
Strand 5
C
110 112anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 94first strand
Strand 2
B
100 110anti-parallel
Strand 3
B
59 69anti-parallel
Strand 4
A
75 76anti-parallel
Strand 5
C
119 120anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 133first strand
Strand 2
E
54 68anti-parallel
Strand 3
F
54 68anti-parallel
Strand 4
E
81 87first strand
Strand 5
E
73 78anti-parallel
Strand 6
E
6 12anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 133first strand
Strand 2
F
54 68anti-parallel
Strand 3
E
54 68anti-parallel
Strand 4
F
81 87first strand
Strand 5
F
73 78anti-parallel
Strand 6
F
6 12anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il