Analysis of interatomic Contacts of Structural Units in PDB entry:
3FMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FMC entry

There are 4 chains in PDB entry 3FMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3LEU 367
B
 VAL 3LEU 367
C
 ARG 2LEU 367
D
 VAL 3LEU 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 3FMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 60Right-handed alpha
Helix 2
2
A
75 80Right-handed alpha
Helix 3
3
A
98 102Right-handed 310
Helix 4
4
A
109 118Right-handed alpha
Helix 5
5
A
121 142Right-handed alpha
Helix 6
6
A
148 163Right-handed alpha
Helix 7
7
A
185 192Right-handed 310
Helix 8
8
A
208 227Right-handed alpha
Helix 9
9
A
249 267Right-handed alpha
Helix 10
10
A
322 325Right-handed 310
Helix 11
11
B
46 60Right-handed alpha
Helix 12
12
B
75 80Right-handed alpha
Helix 13
13
B
98 102Right-handed 310
Helix 14
14
B
109 118Right-handed alpha
Helix 15
15
B
121 142Right-handed alpha
Helix 16
16
B
148 163Right-handed alpha
Helix 17
17
B
185 192Right-handed 310
Helix 18
18
B
208 227Right-handed alpha
Helix 19
19
B
249 267Right-handed alpha
Helix 20
20
B
322 325Right-handed 310
Helix 21
21
C
46 60Right-handed alpha
Helix 22
22
C
75 80Right-handed alpha
Helix 23
23
C
98 102Right-handed 310
Helix 24
24
C
109 118Right-handed alpha
Helix 25
25
C
121 142Right-handed alpha
Helix 26
26
C
148 163Right-handed alpha
Helix 27
27
C
185 192Right-handed 310
Helix 28
28
C
208 227Right-handed alpha
Helix 29
29
C
249 267Right-handed alpha
Helix 30
30
C
322 325Right-handed 310
Helix 31
31
C
327 329Right-handed 310
Helix 32
32
D
46 60Right-handed alpha
Helix 33
33
D
75 80Right-handed alpha
Helix 34
34
D
98 102Right-handed 310
Helix 35
35
D
109 118Right-handed alpha
Helix 36
36
D
121 142Right-handed alpha
Helix 37
37
D
148 163Right-handed alpha
Helix 38
38
D
185 192Right-handed 310
Helix 39
39
D
208 227Right-handed alpha
Helix 40
40
D
249 267Right-handed alpha
Helix 41
41
D
322 325Right-handed 310
Helix 42
42
D
327 329Right-handed 310
Back to top of page

There are 14 sheets in PDB entry 3FMC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 12first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
68 71anti-parallel
Strand 4
A
35 39parallel
Strand 5
A
166 173parallel
Strand 6
A
236 244parallel
Strand 7
A
178 183anti-parallel
Strand 8
A
197 201parallel
Strand 9
A
282 285parallel
Strand 10
A
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
86 87anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
340 345anti-parallel
Strand 3
A
356 362anti-parallel
Strand 4
A
289 293anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 335first strand
Strand 2
A
315 320anti-parallel
Strand 3
A
298 302anti-parallel
Strand 4
A
350 351anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 12first strand
Strand 2
B
18 26anti-parallel
Strand 3
B
68 71anti-parallel
Strand 4
B
35 39parallel
Strand 5
B
166 173parallel
Strand 6
B
236 244parallel
Strand 7
B
178 183anti-parallel
Strand 8
B
197 201parallel
Strand 9
B
282 285parallel
Strand 10
B
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
86 87anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
341 345anti-parallel
Strand 3
B
356 361anti-parallel
Strand 4
B
289 293anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 335first strand
Strand 2
B
315 320anti-parallel
Strand 3
B
298 302anti-parallel
Strand 4
B
350 351anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 12first strand
Strand 2
C
18 26anti-parallel
Strand 3
C
68 71anti-parallel
Strand 4
C
35 39parallel
Strand 5
C
166 173parallel
Strand 6
C
236 244parallel
Strand 7
C
178 183anti-parallel
Strand 8
C
197 201parallel
Strand 9
C
282 285parallel
Strand 10
C
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
175 176first strand
Strand 2
C
340 345anti-parallel
Strand 3
C
356 362anti-parallel
Strand 4
C
289 293anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
331 335first strand
Strand 2
C
315 320anti-parallel
Strand 3
C
298 302anti-parallel
Strand 4
C
350 351anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 12first strand
Strand 2
D
18 26anti-parallel
Strand 3
D
68 71anti-parallel
Strand 4
D
35 39parallel
Strand 5
D
166 173parallel
Strand 6
D
236 244parallel
Strand 7
D
179 183anti-parallel
Strand 8
D
197 201parallel
Strand 9
D
282 285parallel
Strand 10
D
365 366anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
175 176first strand
Strand 2
D
341 345anti-parallel
Strand 3
D
356 361anti-parallel
Strand 4
D
289 293anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
331 335first strand
Strand 2
D
315 320anti-parallel
Strand 3
D
298 302anti-parallel
Strand 4
D
350 351anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il